| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_3909 |
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| Symbol | |
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| ID | 4280800 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 4665800 |
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| End bp | 4668130 |
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| Gene Length | 2331 bp |
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| Protein Length | 776 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 638136730 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_752573 |
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| Protein GI | 114565059 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2200] FOG: EAL domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCAACTA GTTTTCGCAA CCGACTGATA ATAGCTTTTC TATTAATATT AACCTTAATG
CAGTTAACTA CTGCGTTGTT TGTATTAAGC GCAACTCAGC GAGATTTTCG CCAACAACAA
ACTCAAAATC TTAATATTGG CTCCAATATT TTTGTCGAAA TGTTGTCGAA TCGAAGCGAT
CAGCTTAATC AAAGTTTGTC GTTACTCAGT GCTGACTTTG GTTTTAAACG CGCTGTGGCC
ACTGGCGAGC AAGATACAAT ATCGTCAGTG TTAGCCAACC ATGGCAGGCG TATTAATGCT
GACGCTGCTA TTTTATTATC TCCACAGGGG AAATTACTTT CTTCAAGCTT ACAAGGTCTC
ACTGCAGCCA ATGTTGATGA GTTATTTGCA TTAACCAAGA ATCGCTCAAC CACGTTTGAA
ATTTTTAATT ATGACCACAG TAGTTACCAA TTTGTGTTGC AACCCGTCAA AGCCCCAACA
TTAATAGCCT GGGTCGGCAT GGGTTTCACT ATGGACAAGA ATGTCGCAGA CCAAGCCAAA
ACCATTACCG GAATTGATAT CAGTTTTATC AACCAGTCCG CTGGCAGAAT TGAAATTGTC
TCGACCTTAG CCCAAGCTCA ACAACAAGAT GTTTTAGCGC GTATTAACCT ACTCGCAAAG
ACAGTGGATA AGGTCAGTGA TGACATACCA TCAAACTACT TATCTACTAC CATTGCGTTA
GATAAAAATA GTGGTCATCA GTGGGCGGTA CTGCATCAAT CAAATGTTAA GTGGCAGCAA
AATTACGATG CCCTGCGTAA TAACATGTTA ATTATATTCG CGATAACGTG TTTACTGGCG
TTTATGGTTG CCGCTTGGTT TTCTGGCGGC TTAACGAAAC CCATTTATGC GCTAGTTAAT
TTTGCACGCA AAGTCGGCCA AGGTGAAAAC CCTCCGCCAA TTAAAGGTGC ACCTGCTGAG
TTACAAGTAT TAGCCAACAC CTTATCGATA ATGCGTGAAA ATATTGAATC GCGCGAAAAC
GATTTAGTTT ATCAATCACA ACACGATAAC CTCACGGGTT TATATAATCG CTTGGCTGCT
AAACAACAAC TCAGCCTGCT GCTCAGTAAA ATGCATGGCA GCTTAGTGAT GATAGACATT
AAAAACTTTC GCCATTTAAA TAACATCATT GGATTTGCCA ATGCCGACGA TTTATTGGTG
TTGTTTGCCA GCCGTTTAGA AAGCTTATCC CCAACGGCCC AATTAATATC GCGCTTGGAT
GGCGACTCGT TTTTGTTGCT ATTTCAACCG GGTATTCATC ATGAAAAGCT TGATAACTAT
CTACGTCAAT TAACTAACCC ATTTTCTATT CAGGGTTCAA AAATAAGTGT CAATGTGCGG
GTAGGGATTG TTGATTTATC CAGTGACTAT GACTGTAATG ACATCGACAC GTTAATTCGC
CATGCTGAAA TTGCATTAAA TCAGGCCCGA GTGGAATCCC TAGGCATTGC CACTTATCAA
CAAGGCGAAG ATGAACGCTA TCTGCGTGAG TTAATGATTA TTCGTGATTT ACCGATTGCC
TTAGCACAAG GGCAATTACA TTTGGTGTTT CAACCTAAAG TGAATATTCA GAGTAATCAT
TGCCATGGTG CAGAAACGCT AATCCGCTGG CAACACCCGG AATTGGGATT TATCCCGCCA
GATGAATTTA TTCGCTTAGC TGAAAACTCA GGTAATATCT CGATGATTAG TGACTGGGTG
TTAAATACCA CCATAAAGCA GCTAGCCCAA TGGCAGCTGC AAGGTATTTC GCTGACGGTG
GCGATTAATT TATCAGCCCA CGATCTCACT AATCCTCAGC TGCCGTTAGA CATTGAAAAG
TTACTGATTA GCAATCATTT ACCGATTAAT GCTTTGTCGA TAGAGGTAAC CGAAGGTGCT
GTGATGAAAG ATGCACAAAC GGTAATTGCC GTTTTACAGC AGTTTAGAAA TATCGGTTTG
GCCATTGCCA TCGACGACTT TGGCACCGGG CACTCTTCAT TAGCTTACTT AAAGCTACTG
CCCGTTAATG AAGTGAAGAT TGATCGCAGT TTTATCAAAG ATATTCATAC CGATGCAACT
GATTTAATGA TTGTGGATAG CAGCATTCGA TTAATTAAAG GGCTCAATTT ATCCGTCGTG
GCTGAAGGCG TTGAATCTGT AGAAGGGATC AATATTCTAC GTGGACTCAA TTGCGACATA
ATTCAAGGTT ATGTGTATTC TAAGCCGCTA AAAGCAGATG ATTTTATTGT GTGGTTCCAA
CAATTTAATC AGTCTAATAT TCAGACTCTC AGTAAGGATA CGCCACACTA A
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| Protein sequence | MPTSFRNRLI IAFLLILTLM QLTTALFVLS ATQRDFRQQQ TQNLNIGSNI FVEMLSNRSD
QLNQSLSLLS ADFGFKRAVA TGEQDTISSV LANHGRRINA DAAILLSPQG KLLSSSLQGL
TAANVDELFA LTKNRSTTFE IFNYDHSSYQ FVLQPVKAPT LIAWVGMGFT MDKNVADQAK
TITGIDISFI NQSAGRIEIV STLAQAQQQD VLARINLLAK TVDKVSDDIP SNYLSTTIAL
DKNSGHQWAV LHQSNVKWQQ NYDALRNNML IIFAITCLLA FMVAAWFSGG LTKPIYALVN
FARKVGQGEN PPPIKGAPAE LQVLANTLSI MRENIESREN DLVYQSQHDN LTGLYNRLAA
KQQLSLLLSK MHGSLVMIDI KNFRHLNNII GFANADDLLV LFASRLESLS PTAQLISRLD
GDSFLLLFQP GIHHEKLDNY LRQLTNPFSI QGSKISVNVR VGIVDLSSDY DCNDIDTLIR
HAEIALNQAR VESLGIATYQ QGEDERYLRE LMIIRDLPIA LAQGQLHLVF QPKVNIQSNH
CHGAETLIRW QHPELGFIPP DEFIRLAENS GNISMISDWV LNTTIKQLAQ WQLQGISLTV
AINLSAHDLT NPQLPLDIEK LLISNHLPIN ALSIEVTEGA VMKDAQTVIA VLQQFRNIGL
AIAIDDFGTG HSSLAYLKLL PVNEVKIDRS FIKDIHTDAT DLMIVDSSIR LIKGLNLSVV
AEGVESVEGI NILRGLNCDI IQGYVYSKPL KADDFIVWFQ QFNQSNIQTL SKDTPH
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