Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_3906 |
Symbol | |
ID | 4280797 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | - |
Start bp | 4662715 |
End bp | 4664157 |
Gene Length | 1443 bp |
Protein Length | 480 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 638136727 |
Product | transcriptional regulator, Fis family protein |
Protein accession | YP_752570 |
Protein GI | 114565056 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG2202] FOG: PAS/PAC domain [COG3604] Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains |
TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
Num covering plasmid clones | 28 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACTGACT CTACAACCAC TAAATATATT GGCACCGATC ATTTTCTGCC TGAAAATACT TTGTTGCTTA ATGCCATGAC AGAAGGCGTG TATGGTTTTG ATTTAGCGGG TAATGCGGTG TTCATTAACC CCGCAGCAGA ACAAATGACT GGCTGGAAAA GTGCTGAATT AATTGGCAGA AATATTCACG ACTGCCATCA TCATAGTCAT GCCGATGGTA GCCATTATCC TCAACATGAC TGTCCCATTT ATCGCACCTT ACATGATGCT ATTCCTCGGC AAGTGAACGA AGATGTATTT TGGCGTAAAG ATGGCAGCAG CTTTCCGGTG TATTACAGCT CAACCCCTGT ATATGATCAG CAACAACTTG TCGGTGTTAT CGCGATATTT CGTGATGTAA GTATGCAAAA ACATACCGAG CAATCGTTAA GACAAGCATT AGCACAAGTG CAGGCCTTGT CAGAACGGTT AGCATCAGAA AATCAATACT TACTCACTGA GCTACAAGGC CAACAAGGCG CGTCGGGAAT ATCGGGTAAC AGCCAACCTA TCAATCAACT CATTCAGCAG ATCCATTTGG TCGCTAATAC CGACAGTACG GTGTTAATTT GCGGTGAAAA CGGCACCGGC AAAGAGTTAG TTGCGCGTAA CTTACACAGG CTAAGTCATC GTAAAGACCA GCCGATGGTG AGTGTTAACT GCGCCGCATT TTCGACCGCA TTGTTAGAAA GTGAGCTGTT TGGTCATGAA AAAGGCGCAT TTACTGGTGC TACAGCACGT CGCAAAGGCC GGTTTGAATT AGCCAATAAT GGCACCTTAT TTTTAGATGA AATTGCTGAA CTGAGTTTAT CGGCACAATC TAAATTGTTA CGGGTAATTC AAGAGCAAAG CTTCGAGCGC GTTGGCAGTA GTGAAACCAT TAAGGTCAAT ATTCGCTTAG TGGCTGCCAC CCATCACGAT TTAGCCGCGC GAGTAGAGCA AGGCTTGTTT CGCATGGACT TATATTATCG CTTGAATGTG TTTCCAATAA CGGTGCCGCC GTTACGAGAG CGCCGCGAAG ATATTCCGCA ATTAGTCAGT GATTTAGTCG CATCGCTGAG TAAAAAGCTT GGTAAAAAAA TCACTAAAGT GAGTGCTAAA GGGTTGAAGA ACTTACAGCA ATACTCCTGG CCCGGTAACG TACGTGAGCT ACAAAACCTG ATTGAGCGAG AAATGATTTT ATCGCAAAGC GGTCATTTGC TGTTTAATAC TTTACCTGTA GCGGTTACAA CTCCGTTAGC TACCAGCACG TTAACCATGG CACAAGCCGA AGCTGCGCAT ATTATTGCGA TATTAAATGC TAGCCACTGG CGTATTTCTG GTCCGTCTGG TGCTGCTGCG ATGTTAGATA TGCCTGCGAG TACCTTACGA TCTAGGATGA AAAAGTTAGC TATTAGTCGC TAA
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Protein sequence | MTDSTTTKYI GTDHFLPENT LLLNAMTEGV YGFDLAGNAV FINPAAEQMT GWKSAELIGR NIHDCHHHSH ADGSHYPQHD CPIYRTLHDA IPRQVNEDVF WRKDGSSFPV YYSSTPVYDQ QQLVGVIAIF RDVSMQKHTE QSLRQALAQV QALSERLASE NQYLLTELQG QQGASGISGN SQPINQLIQQ IHLVANTDST VLICGENGTG KELVARNLHR LSHRKDQPMV SVNCAAFSTA LLESELFGHE KGAFTGATAR RKGRFELANN GTLFLDEIAE LSLSAQSKLL RVIQEQSFER VGSSETIKVN IRLVAATHHD LAARVEQGLF RMDLYYRLNV FPITVPPLRE RREDIPQLVS DLVASLSKKL GKKITKVSAK GLKNLQQYSW PGNVRELQNL IEREMILSQS GHLLFNTLPV AVTTPLATST LTMAQAEAAH IIAILNASHW RISGPSGAAA MLDMPASTLR SRMKKLAISR
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