| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_3889 |
|---|
| Symbol | |
|---|
| ID | 4280780 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | - |
|---|
| Start bp | 4643601 |
|---|
| End bp | 4644905 |
|---|
| Gene Length | 1305 bp |
|---|
| Protein Length | 434 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 638136710 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_752553 |
|---|
| Protein GI | 114565039 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATACATA TACCCGACGA TTTTCAGGCT GCTAACTCCG ACAATAAAGA CATACTGTAT
TATTCAAAGA AACGTCTTAT GTTTAAAAAT CAGTTTGGTA TCAATATAGG TTTGTTGGCA
GTGTTTATCT GTAGTATTGG CCTTGGCCAT GCTGCTGAAA ATACTGAGTT GGCACAGCTA
CTCAACATGA GCCAGGTCCT ATTAAATAAT CCTACCCAAA CGAGTAATCG CCCCTTAAGC
AATGAAGCAA ATTTCACCAG TTCGACGTGG CTTAACGGAT TACCCAATAT CAGTATAAAG
CACCTCGGTA GCATCGATAA TAGTAACATT CATGAGCAAG AACTTTCACT TAATTTGCCC
ATAAAATCAC CGAGTTTATA TACAAGCGAT AAACAGCTAA AGCAATTCAC GCAAGCCATA
GTGGATCAAC AACGAGCCTT ACAAGGTTTG TATCTATCGG GCTTACTAAG ACAAAGTTTG
TGGGATCAAC GTTTAGCCTC GGTAAAGCTT TCTCAGCTTA TACGTAAAGC AACATTACTC
AATAAATTGT ACGCCCAACA AAAACAATTG GCTGAGATTG GAGAGTTGCC CATTGCCAAT
TTTTTATTGC TGGAACGAGA ATTAATCGAC ATTGACCTTG ATAAAATAAC CATTATTCAG
TCAAAAAATG AAGCGATGAC CTTATTTACT CAACTCACTG GCCAAACAGA TATACCGCAG
GATATTGCCG AAACTGCCCG TCCATTAGTG GGTACTTCTC AGACAGAAAA TGATCTGACA
CAACATCCAT TATGGCAATT ACAGCAACTG CAACAGCAAC AACAAATGCT GATAATTAAC
AGCCAACAAG CTGGCGAACA AGACCCGTGG ACAGTGTCAT TAACCGCCAA AAATACTTCA
GATGGTATCG TTGATGATAA GCAATTGGGT ATTGGTATCA CAGTGCCTAT CACGTTTGGT
TCGGCGTTAT CACAAAGCGA ATTGTCTGGA TGGCAGCAAT CCCATGCCGA ACAAATGATT
AATCGCGATC GCACTTATTT GGAGCTAACC AACCAGCTTA AGATATTGCG TCAGCAACAA
CACAATCTGC TCGATCAACA AGCTTTACTC ACCCGTGCAT TATCGCTTAG TCGCACCATT
ACCGAAGAAC TTGCCAAAGT AAAAGATCAA AGCCAAGTCA GTTATGAGGT GTGGCTGCGC
CGATATATGG ACGCCCTCGA TACTGAGTCA CGTTTGGCCA TTAATTTGGT CATGCAACAG
CAACTTCATT CCCAGCAACT TCAAGCTTTA GGTATCTCAT TATGA
|
|---|
| Protein sequence | MIHIPDDFQA ANSDNKDILY YSKKRLMFKN QFGINIGLLA VFICSIGLGH AAENTELAQL
LNMSQVLLNN PTQTSNRPLS NEANFTSSTW LNGLPNISIK HLGSIDNSNI HEQELSLNLP
IKSPSLYTSD KQLKQFTQAI VDQQRALQGL YLSGLLRQSL WDQRLASVKL SQLIRKATLL
NKLYAQQKQL AEIGELPIAN FLLLERELID IDLDKITIIQ SKNEAMTLFT QLTGQTDIPQ
DIAETARPLV GTSQTENDLT QHPLWQLQQL QQQQQMLIIN SQQAGEQDPW TVSLTAKNTS
DGIVDDKQLG IGITVPITFG SALSQSELSG WQQSHAEQMI NRDRTYLELT NQLKILRQQQ
HNLLDQQALL TRALSLSRTI TEELAKVKDQ SQVSYEVWLR RYMDALDTES RLAINLVMQQ
QLHSQQLQAL GISL
|
|---|
| |