Gene Sfri_3828 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_3828 
SymbolradC 
ID4280719 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand- 
Start bp4565471 
End bp4566148 
Gene Length678 bp 
Protein Length225 aa 
Translation table11 
GC content43% 
IMG OID638136649 
ProductDNA repair protein RadC 
Protein accessionYP_752492 
Protein GI114564978 
COG category[L] Replication, recombination and repair 
COG ID[COG2003] DNA repair proteins 
TIGRFAM ID[TIGR00608] DNA repair protein radc 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value0.760529 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGGAATTA AAGATTGGCC ACAAGGAGAA GGGCCGCGAG AAAAGTTATT GCTCAAAGGT 
GCAGGACATC TTTCGGATGC AGAATTGCTC GCGGTGATAT TACGTAATGG TTTGGCAGGG 
CAAAATGCAG TGGATTTAGC CCGAAACATG ATTAATCAGT TTGGTGGTTT GCGCAGTTTA 
CTGAGTGCCT CTAAAAGCCA AGTATGTAAA TTAGCCGGTG TTGGGCCGGT AAAATATGCT 
CAATTACAGG CTGCAGTGGA AATTTCTAAG CGAATTGCCC ATGAAAATCT ACAAAGAGGG 
CAAATTTTGA CAAATCCTGA TTTAACTCGG GACTATTTAA TGAGACAATT GGCAGACCGA 
TCCTATGAAG TGTTCGCCTT ACTATTGTTG GATACCCAAC ATAGAGTCAT TCAATTTGTA 
GAATTATTTC GTGGCACTAT CGATTCTGCT TCTGTTTATC CTCGCGAGGT TGTAAGCCTT 
GTTTTGGAGA AAAAAGCGGC AGCGGTAATT GTGTGTCACA ATCACCCGTC TGGCATTGCA 
GAGCCAAGTC AGGCTGATCG GCGAATAACT GAGCGAATAA AAAATGCATT GGCAACCATC 
GATGTTTCTT TGTTAGATCA TATGGTTGTA GGTGATCAGG AGATAGTCTC CTTTGCCGAG 
CGTGGGTGGA TTGTATAA
 
Protein sequence
MGIKDWPQGE GPREKLLLKG AGHLSDAELL AVILRNGLAG QNAVDLARNM INQFGGLRSL 
LSASKSQVCK LAGVGPVKYA QLQAAVEISK RIAHENLQRG QILTNPDLTR DYLMRQLADR 
SYEVFALLLL DTQHRVIQFV ELFRGTIDSA SVYPREVVSL VLEKKAAAVI VCHNHPSGIA 
EPSQADRRIT ERIKNALATI DVSLLDHMVV GDQEIVSFAE RGWIV