Gene Sfri_3819 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_3819 
Symbol 
ID4280710 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand- 
Start bp4554443 
End bp4555537 
Gene Length1095 bp 
Protein Length364 aa 
Translation table11 
GC content45% 
IMG OID638136640 
Product3-isopropylmalate dehydrogenase 
Protein accessionYP_752483 
Protein GI114564969 
COG category[C] Energy production and conversion
[E] Amino acid transport and metabolism 
COG ID[COG0473] Isocitrate/isopropylmalate dehydrogenase 
TIGRFAM ID[TIGR00169] 3-isopropylmalate dehydrogenase 


Plasmid Coverage information

Num covering plasmid clones32 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGTTATC AAATAGCAGT TTTGTCAGGT GATGGTATTG GTCCTGAAGT GATGGCTGAA 
GCGCGTAAAG TGCTTAATGC TGTAGAAACA CGATTTGGAC TGGATATTCA ATACACCGAG 
TTTGATGTCG GCGGTATTGC CATTGATAAC CATGGTTGTC CTTTACCTGA CGCGACCTTA 
AAAGGCTGCG AAGCAGCTGA TACGATTTTA TTTGGTAGTG TGGGTGGCCC TAAGTGGGAA 
AATTTACCAC CAAACGATCA ACCTGAACGC GGCGCATTAT TGCCATTGCG TGGACACTTT 
GAGCTATTTT GTAATTTACG CCCAGCCAAA TTACATGACG GCTTAGAACA CATGTCACCG 
CTTCGTAGTG ATATATCAGC CCGTGGTTTT GACGTGTTAT GTGTGCGTGA ATTAACAGGT 
GGTATTTACT TTGGTAAGCC GAAAGGACGT CAAGGTGAAG GCGACGATGA AGAAGCCTTT 
GATACCATGC GCTATAGTCG CCGCGAGATT AGCCGTATTG CTCGTATCGC TTTTGAAGCG 
GCGCGTGGCC GTAAAAATAA GGTCACCTCA GTAGACAAGG CCAACGTATT AGCCTGTTCA 
GTATTATGGC GCCAAGTGGT TGAAGAAGTC GCAAAAGACT TTCCGGATGT CACTTTAGAA 
CACATCTATA TTGATAACGC GACTATGCAG TTACTACGCC GCCCTGATGA GTTTGATGTA 
ATGTTATGTT CAAACTTATT CGGTGATATT TTATCAGACG AAATTGCCAT GTTAACCGGC 
TCTATGGGGT TATTATCGTC GGCAAGTATG AACAGCACCG GTTTTGGTTT ATTTGAACCC 
GCTGGTGGCA GTGCACCAGA TATTGCTGGC CAAGGTATCG CTAATCCGGT GGCACAAATT 
TTATCTGCTG CATTAATGTT ACGCCACAGC CTAAAGCAAG AAGAGGCGGC AAGTGCTATT 
GAACGTGCAG TGACAAAAGC ATTGGCAAGT GGTTATCTAA CCAGTGAATT ATTGGCTGCA 
GACAAACGCA GCGAAGCTAA GTCTACTGCG CAAATGGGTG ATTTTATCGC TCAGGCAATA 
AAGGAAGGTG TGTAA
 
Protein sequence
MSYQIAVLSG DGIGPEVMAE ARKVLNAVET RFGLDIQYTE FDVGGIAIDN HGCPLPDATL 
KGCEAADTIL FGSVGGPKWE NLPPNDQPER GALLPLRGHF ELFCNLRPAK LHDGLEHMSP 
LRSDISARGF DVLCVRELTG GIYFGKPKGR QGEGDDEEAF DTMRYSRREI SRIARIAFEA 
ARGRKNKVTS VDKANVLACS VLWRQVVEEV AKDFPDVTLE HIYIDNATMQ LLRRPDEFDV 
MLCSNLFGDI LSDEIAMLTG SMGLLSSASM NSTGFGLFEP AGGSAPDIAG QGIANPVAQI 
LSAALMLRHS LKQEEAASAI ERAVTKALAS GYLTSELLAA DKRSEAKSTA QMGDFIAQAI 
KEGV