| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_3806 |
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| Symbol | murD |
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| ID | 4280697 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 4538608 |
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| End bp | 4539930 |
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| Gene Length | 1323 bp |
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| Protein Length | 440 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 638136627 |
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| Product | UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase |
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| Protein accession | YP_752470 |
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| Protein GI | 114564956 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0771] UDP-N-acetylmuramoylalanine-D-glutamate ligase |
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| TIGRFAM ID | [TIGR01087] UDP-N-acetylmuramoylalanine--D-glutamate ligase |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAAACTC AATATACGCA CATTGTTTTA GGCTTAGGGG CAACAGGGCT CTCGGTCGTG
CGTTTTTTAG CAACTAAAGG CATTAAGCCT TTAGTCATGG ACAGTCGTCG TCATCCGCCT
GGTGCAGATA CGCTGGCACA AGAGTTTGCC GATATTGAAT TATTGGCCGG TGGGTTTGAT
TGCCGTTATT TAGTTCAAGC CAGCCAAATT ATCATCAGTC CTGGTGTTCC AATCGATACG
CCTGAAGTAC GCGCTGCGTT GGACATGGGA ATTGAAGTGA TTGGTGATGT TGAGTTATTT
GCTCGAGAAA TCGCAGACAA GAAACCTTGC GTTGTGGGTA TCACTGGATC AAACGGTAAA
TCTACGGTAA CGACATTAGT GTACGAAATG TTGTTAGCTG CCGGAAAGTC GGTGGCGATT
GGCGGTAACA TTGGTACACC AGCGCTGGAT TTATTACCTC AAAATGCAGA CTTTTACGTA
CTTGAGCTAT CGAGTTTTCA ACTTGAAACC ACTCATTCAT TAAATTGTAT TGCGGCAACG
TGTCTCAATG TTAGCGAAGA CCATATGGAT CGCTATAGTG ACTTGAATAC TTACCGTGAA
GCCAAATTAC GCTTATACCC ACAAAGCCGC TTTGTGATGT ACAACCGTGA CGACGAATTA
ACTTATCCGC TAGAGCCAAT GAATCAAAAT AATTTTGGTT TGGGCGTGCC AGAAGGTGAT
GCATGGGGAT TAAGTGATGG CAAGATTTTC CATGGTGACA GTGAAATTAT TAATTTAATT
GATGTGACCT TAATTGGTAG CCATAACCAT GCAAACTTAT TAGCCGCAAT GGCATTAGCC
GATGCTTGTG GTGTGGGTAA AGAAGCCATG ATTGAAGTGG CTAAATCCTT TGTTGGCTTA
AGTCATCGTT GCGAATTGAT TGCCGTTAAG CAAGGTGTGT CGTATATCAA TGACTCTAAA
GCAACCAATG TCGGCGCGAC AGTTGCCGCA CTAGAGGGGC TTAATTCTCA TTTAGGTGAT
TTGTACTTGA TCGCCGGTGG CGATGGTAAA GGCAGTGATT TTCGTCCACT AACAGAACCG
TTGAGTAATA TTACCCAGCT TATTACCTTA GGGCGAGATG GCCGAAAAAT TGCCAAATTA
AAAGCAGGCA CTATTGAAGT GGCAACGATG GCTGAAGCCG TCGCCAAAGC CGCTGAATTA
GCATCGTCTG GTGACATCGT TTTATTGTCG CCAGCATGTG CCAGTTTAGA TATGTATAAA
AACTTTATGG CTCGCGGTGA TGATTTTAGA CAGTGTGTGG AGTCGTTAGC CGATGGCGAA
TAA
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| Protein sequence | MQTQYTHIVL GLGATGLSVV RFLATKGIKP LVMDSRRHPP GADTLAQEFA DIELLAGGFD
CRYLVQASQI IISPGVPIDT PEVRAALDMG IEVIGDVELF AREIADKKPC VVGITGSNGK
STVTTLVYEM LLAAGKSVAI GGNIGTPALD LLPQNADFYV LELSSFQLET THSLNCIAAT
CLNVSEDHMD RYSDLNTYRE AKLRLYPQSR FVMYNRDDEL TYPLEPMNQN NFGLGVPEGD
AWGLSDGKIF HGDSEIINLI DVTLIGSHNH ANLLAAMALA DACGVGKEAM IEVAKSFVGL
SHRCELIAVK QGVSYINDSK ATNVGATVAA LEGLNSHLGD LYLIAGGDGK GSDFRPLTEP
LSNITQLITL GRDGRKIAKL KAGTIEVATM AEAVAKAAEL ASSGDIVLLS PACASLDMYK
NFMARGDDFR QCVESLADGE
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