| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_3784 |
|---|
| Symbol | |
|---|
| ID | 4280677 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | + |
|---|
| Start bp | 4505817 |
|---|
| End bp | 4507076 |
|---|
| Gene Length | 1260 bp |
|---|
| Protein Length | 419 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 638136597 |
|---|
| Product | type II secretion system protein |
|---|
| Protein accession | YP_752450 |
|---|
| Protein GI | 114564936 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1459] Type II secretory pathway, component PulF |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCCACAA TAACAGCAAA GAAAAAGCCA AAGGCGAAAA AAAAAACCAA ACACCAACCT
AAGGTTTTTA CTTACCAATG GAAGGGTGTT AATCGTGATG GTCAACGTAC TTCTGGTGAG
TTGAAAGGAT CCACGATTGC TGAAATCCGT AGTGTGTTAA AAGCACAAGG TGTCACCCCT
AAAGGGGTGC GTAAAAAGTC GGCGCCTTTA TGGAAAACAG AAAAAAGTAT TACCGCAATG
GATATTGCGA TGATTACCCG CCAAATAGCT ACCATGCTTG CTGCTGGTGT CCCATTAGTC
ACAACTATTG AACTTCTTGG CCGTGGCCAT GAAAAAGCTA AAGTCCGAGA ATTACTGGGT
ACTATTTTAT CCGATGTCCA ATCAGGTATT CCACTTTCAG ATGCACTAAG ACCTCACCGA
CGATATTTTG ATGATTTATA TGTCGATTTA GTCGCTGCTG GCGAACATTC TGGCTCACTC
GATGCCGTGT TTGATCGTAT CGCAACTTAT CGTGAAAAAG CTGAACAATT AAAATCTAAA
ATTAAAAAAG CGATGTTCTA TCCTGCTGCT GTCGTAGTTG TAGCAATTGC TGTTACGTCG
TTATTGTTGC TTTTTGTTGT GCCCCAATTT GAAGATATAT TTAATGGCTT CGGTGCAGAA
TTACCGGCAT TTACTCAAAT GATTATTGGT ATCTCGCGCT GGTTACAAAG CTCATGGTAC
TTCTTTGTAA TAGCTATTGT TATCGGGATC TGGCTTTTTA GACGAACTCA TCGTAATTCT
CAAAGTTTTC GCGACCGAAT TGACCAAATG GTACTGAAGA TACCCGTGAT TGGTGACATT
CTTCACAAAG CGTCTATGTC GCGTTTTGCT CGAACCTTAT CAACAACCTT TGCTGCAGGC
GTACCATTAA TTGATGGTTT AGAGTCTGCC GCGGGTGCTT CTGGTAACTA TGTGTACCGT
AAAGCACTAT TAAAGGTTCG CCAAGAAGTG ATGTCGGGTA TGCAGATGAA TGTTGCCATG
CGCACCACTG GCTTATTTCC AGACATGCTG ATTCAAATGG TGATGATTGG TGAAGAATCG
GGTGGTTTGG ATGAAATGCT TAATAAAGTG GCTAACATAT ACGAAATGCA AGTTGATGAT
GCGGTTGATG GTTTATCCAG TTTAATAGAA CCCATCATGA TGGTAGTCAT TGGTACTCTG
GTTGGAGGCC TTATTGTTGG TATGTATTTG CCTATTTTCG AAATGGGTAA CGTTGTTTAG
|
|---|
| Protein sequence | MATITAKKKP KAKKKTKHQP KVFTYQWKGV NRDGQRTSGE LKGSTIAEIR SVLKAQGVTP
KGVRKKSAPL WKTEKSITAM DIAMITRQIA TMLAAGVPLV TTIELLGRGH EKAKVRELLG
TILSDVQSGI PLSDALRPHR RYFDDLYVDL VAAGEHSGSL DAVFDRIATY REKAEQLKSK
IKKAMFYPAA VVVVAIAVTS LLLLFVVPQF EDIFNGFGAE LPAFTQMIIG ISRWLQSSWY
FFVIAIVIGI WLFRRTHRNS QSFRDRIDQM VLKIPVIGDI LHKASMSRFA RTLSTTFAAG
VPLIDGLESA AGASGNYVYR KALLKVRQEV MSGMQMNVAM RTTGLFPDML IQMVMIGEES
GGLDEMLNKV ANIYEMQVDD AVDGLSSLIE PIMMVVIGTL VGGLIVGMYL PIFEMGNVV
|
|---|
| |