Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_3666 |
Symbol | dipZ |
ID | 4280559 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | + |
Start bp | 4345434 |
End bp | 4347320 |
Gene Length | 1887 bp |
Protein Length | 628 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 638136479 |
Product | thiol:disulfide interchange protein precursor |
Protein accession | YP_752332 |
Protein GI | 114564818 |
COG category | [C] Energy production and conversion [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG4232] Thiol:disulfide interchange protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.162085 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGATAAAA GACAACTCAC CATCATGAAA AAACTCGTTG CCATATGCCT TACATCATTG TTAATGATGT CATCAATTTT ACTCGCGCCA GCAGCACACA GTGCTAATGT GTTGAGTAAT AAATTCAGCT TTTTAAGCAG CGAACCTGAG TTAATGAAGG TTAACGATGC TTTTGTGTTT GATTACCAAC AACAAGGTAA TCAACTCAAA ATCAATTTTG TCATTGCTGA AGGCTATTAT TTATATCGCG ACAAGCTGCA GTTTTCGGTC GACGGTGCAG TGATTGGCGA TATTGAATTA CCTCATGGTA AAAACCATCA CGACGAATAC TTTGGCGACC AAGAGGTGTT TTACTCGTTT GTTGAAATCC CTATCGCATT TAAAGAAGCC CAAGCCGATG CGGTATTTCA TGTCACCTTT ATGGGTTGTG CAGAAGGTAC TTTGTGTTAC CCGCCCACCA AACACGATGT AACGTTAACA GCGATTGAAG CAAATGACGG CACATTAAGC AGTAAAAAAG TGATTGGTGC ACCTGATGAC GCGCAAGCAT CGACAACGGC AACCGATGCT CCTGCAGCAC CCATTACTCA GCAAGACACG TTAAACCAAA TGCTCCAAAA CGATAGCCTA TTATGGACCT TGGTGATTTT CTTTGGTTTA GGTATTGGCT TAGCATTAAC ACCATGTGTG TTTCCGATGT ACCCTATTTT GTCGGGCATT ATTGTTGGCC AAGGTAAGAA GTTATCTACC GCTAAAGCCT TCACTCTATC AATGGCCTAC GTACAAGGCA TGGCGATTAC CTACTCTTTA TTAGGATTAG TGGTTGCCTC TGCCGGACTT AAGTTTCAAG CAGCCTTGCA ACACCCAGCC ATTTTGATTT TCTTAGCGGT GATGTTTGTG CTGCTGAGCT TATCAATGTT TGGCATGTAC GATTTAAAAC TGCCATCGAA GTGGCAAGAA AAAATGAACT CGATGTCGAA CAACCAAAAA GGTGGCAACC TTATTGGTGT GTTTATGATG GGGGTGATTT CAGGTTTAGT CGCTTCGCCT TGTACCACGG CGCCGTTATC TGGCGTGCTG ATTTACGTGG CGCAGTCTGG TGATTTACTG CAAGGCTTTT TAGCGCTGTA TGTACTCAGC ATGGGTATGG GTTTACCGTT ATTAGTGATT GGTACTTCGG GTGGCAAAAT CTTACCACGC GCAGGAGCGT GGATGGACAT TATTAAAACC ATCTTTGGTT TCTTACTAAT TTCAGTCTCG ATAGTAATGA TTGGCCGTAT TTGGCCTGGT TTAGTGTCCG ATTTACTCTG GTCATTATGG GCAATATGCT TAGTCGCTTA CTTAATGCAT CAAAACAGGT TGTCAGAATT TAACTGGAAA CAAAGCACTC GTGGGGTATT TTTACTACTG GCTTTGATGG CAAGCTTTTC GTATGGTTTC CAAGCAATCA TGACAGGTTT TGGTCATAAA ACCCCAGATA TTACTCAAGC GGGTGTTGAA GGAAAAACCC AAAATAAAGA GAATCATTTT ATTCGTATTA AGTCGCTTGA AGACTTAGAA GTTGAATTGG ATAAAGCCAG CATTAGCGGT AAAACGGTGA TGTTAGATTT ATACGCCGAC TGGTGTGTGG CCTGTAAAGA GTTTGAAGCG ATTACCTTTA AAAATAAAGA TGTCGCCACG CGCATGAGCC AAATGGTGCT ATTGCAAGCT GACGTAACGG CCAGCGATGA CATTGATATC ACCCTTTTAG AACATTATGG CGTGTTAGGT TTACCTACCT TGTTAATGTT TAATAGCGAT GGCAAACAGC GTGAAGATTT ACGAGTTACT GGCTTTATGG GACCAAAAGA CTTTGCCGCT CATTTAGATA TCCTGCTAGC AAAGTAA
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Protein sequence | MDKRQLTIMK KLVAICLTSL LMMSSILLAP AAHSANVLSN KFSFLSSEPE LMKVNDAFVF DYQQQGNQLK INFVIAEGYY LYRDKLQFSV DGAVIGDIEL PHGKNHHDEY FGDQEVFYSF VEIPIAFKEA QADAVFHVTF MGCAEGTLCY PPTKHDVTLT AIEANDGTLS SKKVIGAPDD AQASTTATDA PAAPITQQDT LNQMLQNDSL LWTLVIFFGL GIGLALTPCV FPMYPILSGI IVGQGKKLST AKAFTLSMAY VQGMAITYSL LGLVVASAGL KFQAALQHPA ILIFLAVMFV LLSLSMFGMY DLKLPSKWQE KMNSMSNNQK GGNLIGVFMM GVISGLVASP CTTAPLSGVL IYVAQSGDLL QGFLALYVLS MGMGLPLLVI GTSGGKILPR AGAWMDIIKT IFGFLLISVS IVMIGRIWPG LVSDLLWSLW AICLVAYLMH QNRLSEFNWK QSTRGVFLLL ALMASFSYGF QAIMTGFGHK TPDITQAGVE GKTQNKENHF IRIKSLEDLE VELDKASISG KTVMLDLYAD WCVACKEFEA ITFKNKDVAT RMSQMVLLQA DVTASDDIDI TLLEHYGVLG LPTLLMFNSD GKQREDLRVT GFMGPKDFAA HLDILLAK
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