| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_3523 |
|---|
| Symbol | |
|---|
| ID | 4280417 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | + |
|---|
| Start bp | 4194931 |
|---|
| End bp | 4195701 |
|---|
| Gene Length | 771 bp |
|---|
| Protein Length | 256 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 638136336 |
|---|
| Product | methyltransferase type 12 |
|---|
| Protein accession | YP_752190 |
|---|
| Protein GI | 114564676 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG2227] 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.538759 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGCAAGATA AAAACTTCGA TAAACTTAGC CAAAAGTTTG CCCAAAATAT TTACGGTACC
ACTAAAGGTG AAATCCGTGC TGCAGTATTA TGGCGCGACT TAGCACCTGC CCTAGCCAGC
CTTGGCAAAC CACGATTACG TATTTTAGAT GCCGGTGGCG GTTTTGGTTA TTTGAGTCAA
AAACTAGCGG CTTTAGGTCA TGATGTTGTG TTGTGTGATA TTTCAGAACA AATGCTTGCC
CTAGCACGGC AACAGATTGA AGCGTCAAAT ACCGCATTAT CGATACAGTT AATCCACAGC
CCAATACAAG CATTAACCGT TGAAGAGTAT GGTCAATTTG ATGTCATTCT CTGCCATGCG
GTAGCAGAAT GGCTAATTGA TGCTCGTAGC ACCTTGCAAG GTTTATTGAG TTTGCTAAAA
CCTCATGGTT TATTTTCTCT GATGTTTTTT AATAAAGAAG CCTTACGGTT TCATAGCTTA
ATATCAGGTA ATTTTGACTA TGTTAACCGT GACTTTAAGG TCAAAAAGAA GGTCGGATTA
ACGCCGACTC ACCCGCTGTA TATTGAAGAT GTCCGCAGTT GGTTTAGCCA ATGGCAACTG
TCGATGGTGA GTCAATCGGG GGTAAGAGTT ATCAATGATT ACTTGAAAAA TAATCTGCCA
CCTAACTTCG ACAAACATCA ACTGATTGAA ATGGAGTTGG CCTACTCGCA ACAAGAACCT
TATTTGTCGC TTGGGCGCTA CATTCACTTT GTAGGCCGAT CGACTCCATA A
|
|---|
| Protein sequence | MQDKNFDKLS QKFAQNIYGT TKGEIRAAVL WRDLAPALAS LGKPRLRILD AGGGFGYLSQ
KLAALGHDVV LCDISEQMLA LARQQIEASN TALSIQLIHS PIQALTVEEY GQFDVILCHA
VAEWLIDARS TLQGLLSLLK PHGLFSLMFF NKEALRFHSL ISGNFDYVNR DFKVKKKVGL
TPTHPLYIED VRSWFSQWQL SMVSQSGVRV INDYLKNNLP PNFDKHQLIE MELAYSQQEP
YLSLGRYIHF VGRSTP
|
|---|
| |