| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_3508 |
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| Symbol | |
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| ID | 4280402 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 4179335 |
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| End bp | 4182241 |
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| Gene Length | 2907 bp |
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| Protein Length | 968 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 638136321 |
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| Product | ATP-dependent helicase HepA |
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| Protein accession | YP_752175 |
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| Protein GI | 114564661 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG0553] Superfamily II DNA/RNA helicases, SNF2 family |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.285717 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCGTTTG CCTTAGGTCA ACGCTGGATA AGTGATACCG AGTCAGAACT CGGATTAGGA
ACAGTCGTTC AAGTTGAAGG CCGCATGGTT ACGCTGCTAT TCCCTGCCAC TGGAGAAAAC
CGGATGTTTT CTCGCAGTGA AGCTCCCTTA ACCCGAGTTA TTTTTAACCC AGGTGACACT
GTCGAAAGCG GTGAAGGTTG GAGTATCACC ATTGAAGAGC TTGAAGAAAA AAACCAATTG
GTGATTTATC ATGGTATTCA TAGCGAGACT CAAGAAAAAG TCAGTCTTCG TGAGACCATG
CTAAGCCACA ATATTCGCTT TAATAAACCA CAAGATCGTT TATTCGCCGG ACAAATTGAC
CGCCTCGAAC GTTTTGGGGT GCGTTATCAA TGTCAGTTAT TGCGCCACAA ATTAGCCACC
TCAGATTTAC TCGGCCAGCA AGGCCCACGC GTAGGCTTAA TTGCACATCA GCAGTGGATC
GCTCATGAAG TGGGTAGCCG TTACGCTCCA CGCGTATTAC TGGCTGATGA AGTCGGTTTA
GGTAAAACCA TTGAAGCTGG CTTAATTATT CATCAGCAAT TACTTACTGG TCGTGCTGAA
CGTATTTTAG TCATTGTGCC GGACACTCTA CGTCACCAAT GGTTAGTTGA AATGCTCCGC
CGCTTTAATT TGCGCTTTTC AGTGTTTGAT GAAGATCGAT GCGTAGAAGC GTATGCCGAC
AATGACAATC CGTTCTATAC CGAGCAGTTA ATTATTTGTT CACTTGATTT ACTGCGTAAG
AAAAAACGTC TTGAACAAGC TGTAGATGCT GATTGGGACT TAATGGTTGT CGATGAAGCT
CACCATTTAG AATGGTCAGA AGACGCACCA AGTCGCGCCT ATAAAATCGT CGAAGCGTTA
AGTGAAGTGG TCCCAGGCGT ATTGCTCCTT ACCGCGACCC CAGATCAACT CGGTCATCAA
AGCCACTTTG CTCGTTTACG TTTGCTCGAT CCTGATCGTT TTTATGATTA CGATGCTTTT
TTAGCTGAAG AAGCAAGCTA CAAAGATGTG GCAGAAGCGG CTGAAGCATT AAGTCAGGAT
AAAAAATTAC CCGACAGCGC AATTAATAGC TTAACTGAGT TGCTTAGCGA GAAAGACATC
GAGCCAAGCA TTCGTTTGAT CCAGTCAAAA GATGTTGATG CAGAATCACA GCAAGCGGCA
CGTCAAGAAT TGCTCCAAGA ATTACTCGAC CGCCATGGCA CTGGCCGCGT ACTGTATCGT
AACAGCCGCG CATCAGTTAA AGGCTTTCCG AAGCGTTTAT TTAATGCTTA CCCACATGAC
ATGCCTGCGC AGTACGTTAC CGCTGAACGC GTTAACGCCA TGATGGGCAG TGCCAAGCAG
CCACAGGCCA AAGCAGCACA AGCATTAAGC CCTGAGAAGC TTTACCAGGC ATTTGAAAAC
GACAGTGCCA GCTGGTGGAA GTTTGATCCA CGGGTAGACT GGTTAATTGA GTTTCTAAAA
TCGCATCGCA GTAAAAAAGT ACTGATTATT GCTAGCCAAG CAGAAACAGC ATTAAGCCTT
GAAGAAGCCC TGCGAACCCG CGAAGGTATT CAAGCTACGG TATTCCATGA AGATATGTCG
ATTATCGAAC GCGATAAAGC CGGCGCTTAC TTTGCTCAAG AAGAAGGTGG CGCTCAAGCA
TTAATTTGTT CTGAAATTGG TTCTGAAGGA CGTAACTTCC AGTTTGCTAG CCATTTAATT
TTGTTCGATT TACCGCTCAA CCCTGATTTA TTAGAGCAGC GTATTGGCCG CTTAGATCGT
ATTGGACAAC AAAACGATAT CCAAATTCAT TTGCCTTACT TGCGCGATAC CGCTCAAGAA
AGATTGATGC GTTGGTATCA TCAAGGACTC AATGCATTCG AACTCACCTG CCCGAGCGGT
CATGTGTTGT TTAACGAATT TGCCGATGAA CTGATTAACG TACTTTGCGA CGACGATGAA
GATCTGATGA CTCAATTGCT GAATCACACC CAGCATCGTT ATAAAGAACT TAAACAGGCA
ATGGAGCAAG GTCGCGATAA ACTACTTGAG ATCAACTCTC ATGGTGGCGA GCGTGCTAAT
GCATTAATTA AGCGCTTATC AGACAGCGAT AACGATACTC ATCTCATCGG TTCGGTCATT
CGCTTGTGGG ATATTATTGG TGTCGATCAA GAAGATCGCG GTGAAAACTC AATCATCTTA
CGCCCGAGTG AACACATGAT GTTCCCTACT TATCCTGGGT TAAATGAAGA CGGTATTACT
GTGACGTTTG ATCGTGAAAC CGCTTTGTCT CGTGATGACA TTGCATTTAT CACCCAAGAA
CATCCTTTGG TACAAACCGG TTTAGATTTA ATCACTGGCT CAGAAACGGG CACCACCAGT
GTGGCAATTC TAAAGAATAA AGCGCTTCCA GCGGGCACTC TGTTTTTAGA ATTAATTTAC
ATGGCCGATG CATCTGCACC AAAATCGACT CAGTTATACC GTTATTTACC ACCGACACCT
ATCCGTGTGT TACTGGATAA AAATGGTCTT AACATGGCAG ACAAAGTGGA CTACGCCAGT
TTTGATAAAC AGCTAAGTGC GGTAAATCGT CACATCGCTA GCAAGCTCGT CAATGCCTCA
CAGCCTATTT TGCATCCGCT ATTGGCCAAA GGTGAAGAGT ATGCAAAAGA GTCGCTTACG
CAGCTAGTCG TGGATGCCCG CGCTAAAATG ACTCAGCAAC TTACAGGCGA ATTGGAACGA
CTTGAAGCCC TAAAAGCCGT AAATCCGAAC ATTCGTGAAG ACGAGCTAGA ATATATTCGT
AATCAAATGA CCGAGATAAC TGGCTACATG GATAACAGTC AATTACAGCT TGATGCAATA
CGTATGGTAC TTGTCAGCCA CGTATAA
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| Protein sequence | MPFALGQRWI SDTESELGLG TVVQVEGRMV TLLFPATGEN RMFSRSEAPL TRVIFNPGDT
VESGEGWSIT IEELEEKNQL VIYHGIHSET QEKVSLRETM LSHNIRFNKP QDRLFAGQID
RLERFGVRYQ CQLLRHKLAT SDLLGQQGPR VGLIAHQQWI AHEVGSRYAP RVLLADEVGL
GKTIEAGLII HQQLLTGRAE RILVIVPDTL RHQWLVEMLR RFNLRFSVFD EDRCVEAYAD
NDNPFYTEQL IICSLDLLRK KKRLEQAVDA DWDLMVVDEA HHLEWSEDAP SRAYKIVEAL
SEVVPGVLLL TATPDQLGHQ SHFARLRLLD PDRFYDYDAF LAEEASYKDV AEAAEALSQD
KKLPDSAINS LTELLSEKDI EPSIRLIQSK DVDAESQQAA RQELLQELLD RHGTGRVLYR
NSRASVKGFP KRLFNAYPHD MPAQYVTAER VNAMMGSAKQ PQAKAAQALS PEKLYQAFEN
DSASWWKFDP RVDWLIEFLK SHRSKKVLII ASQAETALSL EEALRTREGI QATVFHEDMS
IIERDKAGAY FAQEEGGAQA LICSEIGSEG RNFQFASHLI LFDLPLNPDL LEQRIGRLDR
IGQQNDIQIH LPYLRDTAQE RLMRWYHQGL NAFELTCPSG HVLFNEFADE LINVLCDDDE
DLMTQLLNHT QHRYKELKQA MEQGRDKLLE INSHGGERAN ALIKRLSDSD NDTHLIGSVI
RLWDIIGVDQ EDRGENSIIL RPSEHMMFPT YPGLNEDGIT VTFDRETALS RDDIAFITQE
HPLVQTGLDL ITGSETGTTS VAILKNKALP AGTLFLELIY MADASAPKST QLYRYLPPTP
IRVLLDKNGL NMADKVDYAS FDKQLSAVNR HIASKLVNAS QPILHPLLAK GEEYAKESLT
QLVVDARAKM TQQLTGELER LEALKAVNPN IREDELEYIR NQMTEITGYM DNSQLQLDAI
RMVLVSHV
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