Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_3483 |
Symbol | |
ID | 4280379 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | - |
Start bp | 4145409 |
End bp | 4146542 |
Gene Length | 1134 bp |
Protein Length | 377 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 638136298 |
Product | phage integrase family protein |
Protein accession | YP_752152 |
Protein GI | 114564638 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG4974] Site-specific recombinase XerD |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 0.561062 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCTTTGCA TTAAATCCAC ATCTGACTTT GAAATTGAAA GTGTAAAGTA CCCTAACTTT CCCCTCTTAA CGTGGGAAGT TGATAATGCA AAGCTAGGGA TTGAATCTGG AATGCTTTGT GTGGAAGCAA TGCAATTCCT TATTTATGAG TGCTTGAAAC GTGGGCGAGT AGACAGTGAA AATACTTGGT GGACTTATGC CCGCCACTTA AATCAATTCC TGACATTCTG TGAACATAAC GGTTTAGATT GGCGAAATAT TTCTGAAAGT AGTGAAGATG AAATGTTAGT CAGCGCCTAT CGTGACCTTT GCGTTGGTGA GTTTGGCATG TCGGTCAATT CAACCAACCA ACACCTAAGA ACGATCGTGC GGTTTTACAG TTATGGTGTT GGCAAGTGGT TTGACTCATT GCCTTACTCA CTAGAGTCGG TTTCGGTGCG AAAGGGTCAG CAGTTTTTGG CTCATACCGA GAGAAATGGT GGCAAAAAAT ACAGCTCGGA CTTGATGATG AAAACTTTTG AAAAGAAAGC AGAGTTTTTA TCTGCCTATG AAGTTCAAGA ATTGTTATCT TCGATTGAAA ACCCAACGCT CAAACTGATG GTTCGTTTAT GTCTACAGAC AGGAATTAGG CGTAAGGAGC TACTGCTTTT CCCCCTACAC GTAATACGAA AACCTTCTGG AAACCAAACT TACTACGAAG TAAATATCTC ACGGACTAAG GGTGAGAAAG AGCGCAAAAT ACACATTCCA TCAAGGCTAA TGGAAGATTT GTGGCGTTAT GTAAATGAAG CTCGTTTTCA GAAGCAACAA GAATCAGGAG TGAACTCAGA TTGCCTTTTC TTAACCTCTG ATGGTCAAGA ATGGGCTTCG CAAGGCTCTG CCTTTGGAAA GGCGCTCAAA TCTCTGAATC TGCCCTTTCA TGTGGCTCCG CACATGTTAA GACACTCCTA TGCAACTCAC ATGCTCAAAG GGCTCTTAGA GCGCAAAAGC AGTAAGTTTG AGCCATTGAT GTATCTACAA AGCCGTCTTG GACATTCCAG TATTACCACC ACAATGAAAT ATTTACATCT GGTTAATGAT TTGGTGGACG ACCTGTCGAT TGAGTATCAA CAACAAATTG ATGCAATTGT GTAG
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Protein sequence | MLCIKSTSDF EIESVKYPNF PLLTWEVDNA KLGIESGMLC VEAMQFLIYE CLKRGRVDSE NTWWTYARHL NQFLTFCEHN GLDWRNISES SEDEMLVSAY RDLCVGEFGM SVNSTNQHLR TIVRFYSYGV GKWFDSLPYS LESVSVRKGQ QFLAHTERNG GKKYSSDLMM KTFEKKAEFL SAYEVQELLS SIENPTLKLM VRLCLQTGIR RKELLLFPLH VIRKPSGNQT YYEVNISRTK GEKERKIHIP SRLMEDLWRY VNEARFQKQQ ESGVNSDCLF LTSDGQEWAS QGSAFGKALK SLNLPFHVAP HMLRHSYATH MLKGLLERKS SKFEPLMYLQ SRLGHSSITT TMKYLHLVND LVDDLSIEYQ QQIDAIV
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