Gene Sfri_3466 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_3466 
Symbol 
ID4280363 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand
Start bp4121926 
End bp4124904 
Gene Length2979 bp 
Protein Length992 aa 
Translation table11 
GC content48% 
IMG OID638136282 
Producttransposase Tn3 family protein 
Protein accessionYP_752136 
Protein GI114564622 
COG category[L] Replication, recombination and repair 
COG ID[COG4644] Transposase and inactivated derivatives, TnpA family 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCCATCA AAAACGAAAT TTCTATTCTC ACGAGAGCAG AACAGGCAGA TCTTTATTCC 
CCACCCATTT TTTCAATCGA AGAACAACGT CTGTATTTTT CTCTGAACGA TGGGGAATTG
GCAGTTTTTC GGTCAATTCG TCTCAGAGCT CATAGATGTT ACTTTGTCGC GATTTTGGGA
TACTTTAAAT CAAAGCCCGT CATCCTAGAT ATCGCTTACT CGCAGGTTTC TAAGGATTTA
ATGTTCATCA GTAAAGAGCT GCTTGGCGGC AAGGGGCTCA GACCATTCAC TCCCTCACAA
AAACAAAAAG ATCGACTCTA CGCAAAAGTA TTAGACCTTG CTGGTTATCA CAAATGGGAC
GAAAGTCAGC ACTTCAATTC TCTTTTCGAC CACCTTGTTC AGGTGGGCAA TGCCTGGCTG
GAGCCGCGTT ACCTCTTTGA TACTGCTATT GAATTCCTAG CCAGTCACAG CATTGCTATC
CCCAGGTATA CCGTACTCCA GAGACTGATA AGCAGAACAA TGCAGCAGGT CAGAAAAGAC
CTGGCGCACC AACTTAATCA ACTCACCAGT CCTGAACTTC ACGTCTTTCT GGACAGCATA
ACAGCCATTG ATGACGGACT AAGCCTGAAC CAGCTCAGAG GCGGTGCAAA AAGTCTGACC
GTACCTGAGC TTAAAAAAGA GCTTGCCCTT TATCATCAGT TAGCGCCATG GCGCACGCAA
ATCAATGGCG TTATCGATGG GCTTAATCTG TCTCTTAAAA ATCGACAACA CTTCGGTGAG
CTCATCAACT ATTACGGCAG TAAACTCAAA CGATTCAAAC GCGCACAGCA GCATCTATGG
TTGCTATGTC ACCTGACAGA GCGGATACAA CTGGCACTGG AACGGTTAAC TGATGGGTTC
ATTTACCATA TCCGCAAGCA ACAAGAAGCT GCCAACACCT TTGCACAACA AGCAGTGTTC
CTGTCCTGGC AGTCAGCCGC GGACAATGTC ACAAAAGCGG CAGAGTTACT GCATCTGTTT
GTGGATGAGA ACATTGATGA TAATCAACCC TTCTCAGTAG TCAGACAACA GGCATTGAAG
GTCATGAATG ACAGGGATAT CCAGACCCTC TGCCTTTACC TGAAAAAACA GAAACGGACC
GTGGAAGAGT ACCAGTGGCA ACATTACGAT GAACAATGCA ATCTCCTGAA GCAACTGTTA
AGGCAGGTGT TCTTGTGCCT TGATTGTGAG GCCGGTAAAG GCTCAGAAGC CGTCGTCGCC
CAACTTCAAC AGATTCAGAC GGAAATCGCA TCCGGTGGAC CACTGAAGAC GATGGATACG
TCGCTCATCC CGAAAAAGCA CCTCCCATGG TTGGTTAAAC AGGATAACGT TAACCCGCAA
CGTTACGAAT GGCTGCTCTA CCGCCAGTTG ACTTCGCGAC TGAACGGACG CATTTATTTG
CCAAATGTTA CCAAATACCG CGCACTGGAA GACGACCTGA TCCCCCAGAC ATCGCAGGAT
ACCTTGCTGG CCTCATCAAC ACTGGACAGA CTAAAACAGC CCGCAGAGTT ATTGTTACAG
GAGCAACAAC ACCGGCTGGA AAGTGCGCTC AAAGACGTTG CTCTCCATAT TGATGAGGGA
GACAATCGAA ATGTGATCAT GAAAAATCGT ACCGGTACCC GCTGGCGTCT GCCGACCAAA
AGCGCTACAT CTCTGGTCAA CAATCCCTTT TTTAAGCGAA TGCAACCGGT CGATATCGCG
GATGTACTGC GGTATGTAGA GCGCGAAACC GGGTTCATGA AATGTCTGAC TCATGTACTT
CCGATACAAA AACAAGGGTT CACTCATCAG GATGATTTAC TGGCCATTCT GATTGCCAAC
GCCACTCACC GTGGTGTGTA TGGCATGGCG CAGATCTCCG ATCGAAGCTA TGAACACCTG
AGTACGGTGC AGGCCAACTA TATCCGGCCT GAAACGCTGC ATGATGCCAG CGATGTGATC
AATAATGCGG TTGCAGCGCT ACCCATCTTC CGCCACTACC ATATTCAGGA GGACCAGTTG
CATGCCAGTG CGGATGGTCA GAAATTCGAA ACCCATCTGG AAACCTTTAA AACCCGGTAC
TCCTCTAAGT ATTTCGGCAC CAATAAAGGG ATCACGGCCA TGACACTGGT AGCCAACCAC
AGCGCCCTCA ATGCTCGGAT CATCGGTTCC AACGAGCACG AATCACACTA TATTTATGAC
CTGTTACAAT CCAACAGCAG TGATATCAAA CCTGACGTAC TCTCGACAGA TACACACGGT
GTCAATCATG TTAACTTCGC CTTACTGGAT CTATGCGGTT ACAGTTTTGC ACCGCGATAC
GCGCAGTTCA GTAGTGTCAT CAACGATCTG TTTGACGTAA CTGAAAATGA ACATGGCGGC
ACCAACCTTG CCCTGAAAAA GCCCATCAGG ACGAATGTCA TCGAAACGGG ATGGCAGGAT
ATTAGGCGCA TTGTTCTGTC ACTTCAGACA AAGCGAACGA CACAGGCAAT GCTGGTAAGA
AAGTTGTCTG GTTATCCTTC GGGGCACCCG ACATTACAGG CGCTGACGGA GTATAATCGA
CTGGTCAAAG CGCAATATTT ACTGGATTAC ATAGACAATG CCAGTTTGCG GCAGTACGTT
CAGCGTGCTC TTAACCGGGG AGAAGCGTGG CACTTCCTGA GACGGGCTAT TGCGTCGGTA
AATGGCGATC AGTTCCGAGG CAAAAACGAG TCTGAAATCG CTATCTGGAA TGAATGTGCA
AGATTGCTTG CCAACGCGAT CATCTACTTC AACTCCGCGA TACTGAGTCA TCTGCTGGAA
CACTTTGAAG CGAGAGGAGA TGAAGAGAAA GCGGGTATCA CTCGTTCTGT TTCGCCCGTT
GCGTGGCAAA ATATCAACTT AAGCGGAACG TATAACTTCA CTAATACTGG GAAATTGCCC
GATATTGGCG AAATAACGAG GCCGATAGTG GATGATTAG
 
Protein sequence
MAIKNEISIL TRAEQADLYS PPIFSIEEQR LYFSLNDGEL AVFRSIRLRA HRCYFVAILG 
YFKSKPVILD IAYSQVSKDL MFISKELLGG KGLRPFTPSQ KQKDRLYAKV LDLAGYHKWD
ESQHFNSLFD HLVQVGNAWL EPRYLFDTAI EFLASHSIAI PRYTVLQRLI SRTMQQVRKD
LAHQLNQLTS PELHVFLDSI TAIDDGLSLN QLRGGAKSLT VPELKKELAL YHQLAPWRTQ
INGVIDGLNL SLKNRQHFGE LINYYGSKLK RFKRAQQHLW LLCHLTERIQ LALERLTDGF
IYHIRKQQEA ANTFAQQAVF LSWQSAADNV TKAAELLHLF VDENIDDNQP FSVVRQQALK
VMNDRDIQTL CLYLKKQKRT VEEYQWQHYD EQCNLLKQLL RQVFLCLDCE AGKGSEAVVA
QLQQIQTEIA SGGPLKTMDT SLIPKKHLPW LVKQDNVNPQ RYEWLLYRQL TSRLNGRIYL
PNVTKYRALE DDLIPQTSQD TLLASSTLDR LKQPAELLLQ EQQHRLESAL KDVALHIDEG
DNRNVIMKNR TGTRWRLPTK SATSLVNNPF FKRMQPVDIA DVLRYVERET GFMKCLTHVL
PIQKQGFTHQ DDLLAILIAN ATHRGVYGMA QISDRSYEHL STVQANYIRP ETLHDASDVI
NNAVAALPIF RHYHIQEDQL HASADGQKFE THLETFKTRY SSKYFGTNKG ITAMTLVANH
SALNARIIGS NEHESHYIYD LLQSNSSDIK PDVLSTDTHG VNHVNFALLD LCGYSFAPRY
AQFSSVINDL FDVTENEHGG TNLALKKPIR TNVIETGWQD IRRIVLSLQT KRTTQAMLVR
KLSGYPSGHP TLQALTEYNR LVKAQYLLDY IDNASLRQYV QRALNRGEAW HFLRRAIASV
NGDQFRGKNE SEIAIWNECA RLLANAIIYF NSAILSHLLE HFEARGDEEK AGITRSVSPV
AWQNINLSGT YNFTNTGKLP DIGEITRPIV DD