Gene Sfri_3396 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_3396 
SymbolubiA 
ID4280298 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand
Start bp4043763 
End bp4044623 
Gene Length861 bp 
Protein Length286 aa 
Translation table11 
GC content45% 
IMG OID638136217 
Product4-hydroxybenzoate octaprenyltransferase 
Protein accessionYP_752071 
Protein GI114564557 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0382] 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases 
TIGRFAM ID[TIGR01474] 4-hydroxybenzoate polyprenyl transferase, proteobacterial
[TIGR01475] putative 4-hydroxybenzoate polyprenyltransferase 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.442555 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCATTGC AAGATAAGCT TCGTGCTTAT GCACGATTAA TGCGGATTGA TAGGCCTATT 
GGCACCTTGC TGCTGCTATG GCCGTGTTTA ATGGCACTGG TGTTAGCGGC TCAAGGGCTG
CCAGATATTA AGGTGCTGTT AATCTTTATT GTTGGCGTGG TGATTATGCG CGCCAATGGC
TGCATTATTA ATGACTTTGC CGATCGTAAA CTAGATGCTC ATGTAGAGCG TACGAGTATG
CGACCGTTGG TGTCGGGGGA AGTGTCTGTT AAAGAGGCTC TGACTCTATT TACCCTCTTA
GGTTTGGCTG CGTTTTGCTT GGTATTATGG CTTAATCCAC TGGTAGTGCA GTTATCTGTG
GTGGGGATTA TTTTAACGGT GATGTACCCG TTTATGAAAC GGGTGACCAA CATGCCACAA
ATGTTTTTGG GCATTGTGTG GAGTTGGTCA ATTCCAATGG CTTATGCCGC TCAACTTGGT
GAAGTGCCTG TTGAAGCGTG GTGGTTATTT ATGGCCAATT GGTGTTGGAC GGTTGCGTAC
GACACCATGT ATGCCATCGT CGACCGTGAC GATGACTTAA AAGTCGGCAT TAAATCAACG
GCTATTTTAT TCGGTCGCTT TGATCGACAA ATTATCGGTG TGTTTCAACT TGCTGCATTA
GGGTGTTTTG TAATGGCTGG GCTGGTGGCC GACCGTGGGG TTATTTATGG CTTGGGCATT
ATCAGCTTTA TTGGTTTTGC CGTGTATCAG CAACGATTAA TTTTTGGTCG TGAACGTGCA
CCATGTTTTA AAGCCTTTTT AAATAATAAC TGGGCCGGAA TGGTATTGTT TATTGCACTT
GCGCTGGATT ATATGATTTA A
 
Protein sequence
MSLQDKLRAY ARLMRIDRPI GTLLLLWPCL MALVLAAQGL PDIKVLLIFI VGVVIMRANG 
CIINDFADRK LDAHVERTSM RPLVSGEVSV KEALTLFTLL GLAAFCLVLW LNPLVVQLSV
VGIILTVMYP FMKRVTNMPQ MFLGIVWSWS IPMAYAAQLG EVPVEAWWLF MANWCWTVAY
DTMYAIVDRD DDLKVGIKST AILFGRFDRQ IIGVFQLAAL GCFVMAGLVA DRGVIYGLGI
ISFIGFAVYQ QRLIFGRERA PCFKAFLNNN WAGMVLFIAL ALDYMI