Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_3396 |
Symbol | ubiA |
ID | 4280298 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | - |
Start bp | 4043763 |
End bp | 4044623 |
Gene Length | 861 bp |
Protein Length | 286 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 638136217 |
Product | 4-hydroxybenzoate octaprenyltransferase |
Protein accession | YP_752071 |
Protein GI | 114564557 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG0382] 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases |
TIGRFAM ID | [TIGR01474] 4-hydroxybenzoate polyprenyl transferase, proteobacterial [TIGR01475] putative 4-hydroxybenzoate polyprenyltransferase |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 0.442555 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCATTGC AAGATAAGCT TCGTGCTTAT GCACGATTAA TGCGGATTGA TAGGCCTATT GGCACCTTGC TGCTGCTATG GCCGTGTTTA ATGGCACTGG TGTTAGCGGC TCAAGGGCTG CCAGATATTA AGGTGCTGTT AATCTTTATT GTTGGCGTGG TGATTATGCG CGCCAATGGC TGCATTATTA ATGACTTTGC CGATCGTAAA CTAGATGCTC ATGTAGAGCG TACGAGTATG CGACCGTTGG TGTCGGGGGA AGTGTCTGTT AAAGAGGCTC TGACTCTATT TACCCTCTTA GGTTTGGCTG CGTTTTGCTT GGTATTATGG CTTAATCCAC TGGTAGTGCA GTTATCTGTG GTGGGGATTA TTTTAACGGT GATGTACCCG TTTATGAAAC GGGTGACCAA CATGCCACAA ATGTTTTTGG GCATTGTGTG GAGTTGGTCA ATTCCAATGG CTTATGCCGC TCAACTTGGT GAAGTGCCTG TTGAAGCGTG GTGGTTATTT ATGGCCAATT GGTGTTGGAC GGTTGCGTAC GACACCATGT ATGCCATCGT CGACCGTGAC GATGACTTAA AAGTCGGCAT TAAATCAACG GCTATTTTAT TCGGTCGCTT TGATCGACAA ATTATCGGTG TGTTTCAACT TGCTGCATTA GGGTGTTTTG TAATGGCTGG GCTGGTGGCC GACCGTGGGG TTATTTATGG CTTGGGCATT ATCAGCTTTA TTGGTTTTGC CGTGTATCAG CAACGATTAA TTTTTGGTCG TGAACGTGCA CCATGTTTTA AAGCCTTTTT AAATAATAAC TGGGCCGGAA TGGTATTGTT TATTGCACTT GCGCTGGATT ATATGATTTA A
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Protein sequence | MSLQDKLRAY ARLMRIDRPI GTLLLLWPCL MALVLAAQGL PDIKVLLIFI VGVVIMRANG CIINDFADRK LDAHVERTSM RPLVSGEVSV KEALTLFTLL GLAAFCLVLW LNPLVVQLSV VGIILTVMYP FMKRVTNMPQ MFLGIVWSWS IPMAYAAQLG EVPVEAWWLF MANWCWTVAY DTMYAIVDRD DDLKVGIKST AILFGRFDRQ IIGVFQLAAL GCFVMAGLVA DRGVIYGLGI ISFIGFAVYQ QRLIFGRERA PCFKAFLNNN WAGMVLFIAL ALDYMI
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