Gene Sfri_3308 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_3308 
Symbol 
ID4280210 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand
Start bp3953509 
End bp3954387 
Gene Length879 bp 
Protein Length292 aa 
Translation table11 
GC content41% 
IMG OID638136126 
ProductHflC protein 
Protein accessionYP_751983 
Protein GI114564469 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0330] Membrane protease subunits, stomatin/prohibitin homologs 
TIGRFAM ID[TIGR01932] HflC protein 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGGTAGAT TAGCTCTGAT CATTCTCGTG ATCATTTTAG GGGTGAGCTT TTCCTCTTTG 
ATGGTGGTAA GCGAAGGTGA ACGCGCGATT GTTGCACGTT TCGGTAAAGT GCTTAAAGAA
GATGGCGCAA CAACTGTTTT TGCACCAGGC CTTCACTTTA AATTGCCCTT GGTAGATAAA
GTTCGATATT TGGATTCTCG CATCCAGACA TTGGACGGTG CTGCGGATCG TTTTGTGACT
TCTGAAAAGA AAGACTTAAT GGTCGACTCT TATGTTAAGT GGCGTATTCG TGATTTTGAA
AAGTACTATC TTTCTACTAA TGGCGGTATT AAAGCCAATG CAGAAAGCTT ATTACAAGCC
AAAATTAGCA ACGATTTACG TACTGAATTT GGTCGTCGCA CAATCAAAGA AATTGTTTCA
GGTAAGCGTG ATGAATTGCA AACCGATGCA TTAGAAAATG CTTCTGAAAG TGCCGAGAAT
CTAGGTATTG AAGTGGTTGA TGTGCGTGTA AAGCAAATTA ACTTACCTGC TAATGTCAGT
ACTAGTATTT ACCAACGTAT GCGTGCTGAA CGTCAAGCTG TGGCGAAAGA GCACCGTGCG
CAAGGTAAAG AGCAAGCTGA AATTATCCGT GCGACTATTG ATGCCAATGT GACAGTAAAG
ATTGCTGAAG CTGAACGTAA AGCCCTTACC ATTCGTGGTG AAGGTGATGC ATTAGCGGCA
AAGATTTATG CTGATACCTA CAGTAAAGAT GCTGAGTTTT ATAGTTTTTT ACGTAGCTTA
GAAGCGTACA AAGACAGTTT TGCCGGTAAA AATGACATTA TGGTGTTAGA GCCAGAAGGT
GATTTCTTCA AGTACATGAA ATCATCAAAC GGTAAATAA
 
Protein sequence
MGRLALIILV IILGVSFSSL MVVSEGERAI VARFGKVLKE DGATTVFAPG LHFKLPLVDK 
VRYLDSRIQT LDGAADRFVT SEKKDLMVDS YVKWRIRDFE KYYLSTNGGI KANAESLLQA
KISNDLRTEF GRRTIKEIVS GKRDELQTDA LENASESAEN LGIEVVDVRV KQINLPANVS
TSIYQRMRAE RQAVAKEHRA QGKEQAEIIR ATIDANVTVK IAEAERKALT IRGEGDALAA
KIYADTYSKD AEFYSFLRSL EAYKDSFAGK NDIMVLEPEG DFFKYMKSSN GK