Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_3308 |
Symbol | |
ID | 4280210 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | - |
Start bp | 3953509 |
End bp | 3954387 |
Gene Length | 879 bp |
Protein Length | 292 aa |
Translation table | 11 |
GC content | 41% |
IMG OID | 638136126 |
Product | HflC protein |
Protein accession | YP_751983 |
Protein GI | 114564469 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG0330] Membrane protease subunits, stomatin/prohibitin homologs |
TIGRFAM ID | [TIGR01932] HflC protein |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGGTAGAT TAGCTCTGAT CATTCTCGTG ATCATTTTAG GGGTGAGCTT TTCCTCTTTG ATGGTGGTAA GCGAAGGTGA ACGCGCGATT GTTGCACGTT TCGGTAAAGT GCTTAAAGAA GATGGCGCAA CAACTGTTTT TGCACCAGGC CTTCACTTTA AATTGCCCTT GGTAGATAAA GTTCGATATT TGGATTCTCG CATCCAGACA TTGGACGGTG CTGCGGATCG TTTTGTGACT TCTGAAAAGA AAGACTTAAT GGTCGACTCT TATGTTAAGT GGCGTATTCG TGATTTTGAA AAGTACTATC TTTCTACTAA TGGCGGTATT AAAGCCAATG CAGAAAGCTT ATTACAAGCC AAAATTAGCA ACGATTTACG TACTGAATTT GGTCGTCGCA CAATCAAAGA AATTGTTTCA GGTAAGCGTG ATGAATTGCA AACCGATGCA TTAGAAAATG CTTCTGAAAG TGCCGAGAAT CTAGGTATTG AAGTGGTTGA TGTGCGTGTA AAGCAAATTA ACTTACCTGC TAATGTCAGT ACTAGTATTT ACCAACGTAT GCGTGCTGAA CGTCAAGCTG TGGCGAAAGA GCACCGTGCG CAAGGTAAAG AGCAAGCTGA AATTATCCGT GCGACTATTG ATGCCAATGT GACAGTAAAG ATTGCTGAAG CTGAACGTAA AGCCCTTACC ATTCGTGGTG AAGGTGATGC ATTAGCGGCA AAGATTTATG CTGATACCTA CAGTAAAGAT GCTGAGTTTT ATAGTTTTTT ACGTAGCTTA GAAGCGTACA AAGACAGTTT TGCCGGTAAA AATGACATTA TGGTGTTAGA GCCAGAAGGT GATTTCTTCA AGTACATGAA ATCATCAAAC GGTAAATAA
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Protein sequence | MGRLALIILV IILGVSFSSL MVVSEGERAI VARFGKVLKE DGATTVFAPG LHFKLPLVDK VRYLDSRIQT LDGAADRFVT SEKKDLMVDS YVKWRIRDFE KYYLSTNGGI KANAESLLQA KISNDLRTEF GRRTIKEIVS GKRDELQTDA LENASESAEN LGIEVVDVRV KQINLPANVS TSIYQRMRAE RQAVAKEHRA QGKEQAEIIR ATIDANVTVK IAEAERKALT IRGEGDALAA KIYADTYSKD AEFYSFLRSL EAYKDSFAGK NDIMVLEPEG DFFKYMKSSN GK
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