| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_3231 |
|---|
| Symbol | |
|---|
| ID | 4280133 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | - |
|---|
| Start bp | 3869706 |
|---|
| End bp | 3870476 |
|---|
| Gene Length | 771 bp |
|---|
| Protein Length | 256 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 638136049 |
|---|
| Product | ABC-2 type transporter |
|---|
| Protein accession | YP_751906 |
|---|
| Protein GI | 114564392 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1682] ABC-type polysaccharide/polyol phosphate export systems, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACAGTC TGTATTTTGT GGCTTTTAAA AGTATTTTAA CCAAAGAAAT TAATCGCTTC
ACCCGTATTT GGATCCAAAC ATTGGTGCCG CCAGCCATAA CCATGACTTT ATATTTTTTA
ATTTTTGGTA ATTTAGTCGG CAGTCGCATT GGTGAAATGG GCGGCGTTAC CTACATGGAG
TTTATCGCCC CAGGTTTAAT CATGATGTCG GTGATAACTA GTTCATACTC TAATGTGGCC
TCATCGTTTT ACAGCGCCAA GTTTCAACGT AACATTGAAG AAATCATGGT TGCCCCAGTG
CCACATTACG TGATGATAGC CGGTTATGTC GGCGGCGGCG TCGCCCGTGG GTTAAGTGTT
GGTTTAATTG TTACCACAGT GGCGATGATG TTTGTTGATA TCTCGTTACA TCATGTTGGC
TTGGTGGTGT TAACCATGTT TTTAACCTCA GTGTTATTTT CACTCGGCGG GTTAATTAAT
GCGGTATTTG CTAAAAGCTT TGACGACATC AGTATTATTC CGACCTTTAT TCTCACGCCG
TTAACCTATT TAGGTGGGGT GTTTTACTCG TTATCGTTAT TACCATCTTT TTGGCAAGGC
GTATCAGCCT TAAACCCTGT GGTATATATG ATCAACGTAT TCCGCTATGG ATTTTTAGGT
TTTGCTGACT TAAGCGTACC GTTATCAATA GCTATTATGA TTGGTTTTTG TGTCAGCTTA
TGGACTCTGG CTTACTATTT GATATCGCGT GGAATTGGGT TGCGTAGCTA G
|
|---|
| Protein sequence | MNSLYFVAFK SILTKEINRF TRIWIQTLVP PAITMTLYFL IFGNLVGSRI GEMGGVTYME
FIAPGLIMMS VITSSYSNVA SSFYSAKFQR NIEEIMVAPV PHYVMIAGYV GGGVARGLSV
GLIVTTVAMM FVDISLHHVG LVVLTMFLTS VLFSLGGLIN AVFAKSFDDI SIIPTFILTP
LTYLGGVFYS LSLLPSFWQG VSALNPVVYM INVFRYGFLG FADLSVPLSI AIMIGFCVSL
WTLAYYLISR GIGLRS
|
|---|
| |