Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_3196 |
Symbol | |
ID | 4280098 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | + |
Start bp | 3829799 |
End bp | 3830815 |
Gene Length | 1017 bp |
Protein Length | 338 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 638136014 |
Product | diguanylate cyclase with PAS/PAC sensor |
Protein accession | YP_751871 |
Protein GI | 114564357 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2199] FOG: GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCACAGC AGGACATCAT TACTCAATTA CAGCTTGAAC TAGAGCAGCA TAAGCAGACA ATCAAGCAAC TAGAGAATGA GAACAATCGA CTTACTCTAT TAAATAAACG AGTAAACGAG CAACTCAACG CTACGCTTGA TGGCACTGGT TTATGTCTAT GGGAACAACA TATTCCCACC GGGAACCTGA CTATTTTTAA TCAGCAGTGG GGCCATCTGC TCGGGTTTAC TCGTGAAGAG TTACCTGCTC ATATCAGCAG CTGGAAAAAC AATCTACACC CGGAAGACAA AGACTGGGTG ATACAAGCCT TTGAAAGCCA TGTAGCCGGT AACGCTGAAA TTTATCAAGC CGTGCATCGC ATGGTGCACA AAGATGGCAC TGTTGCATGG GTGTCTGACC GTGGGCGTAT TATTGAATAT GGTATTAACG GTGAACCGCT TCGTATTATG GGCACTCATA TTGATGTCAC TCAAGAAAAG CGCTACGAAC AAGATTTAGC CAAACTCGCT CATCGTGATC CGTTAACTAA TTTACTCAAT CGAAATGCAC TCATTGCTGC CTTTGAACAA GGAAAAAGCA CTCACAGTAC ACATCAAGGC GCGCTGTGCT TTATCGATTT GGACGGTTTT AAGATAATTA ATGACCACTT AGGCCATCGA TATGGCGATA GTTTATTAAT CCATATTGCC AACGATATAG CTCAAATATG CGATCAACTC TTTAGTACGC CAGACACAAC ACAAACCCCA CTACATCATG TGGCACGTTT TGGTGGTGAT GAGTTTGTCA TTTTAGCCCA TTGTAATGAT GTGGAACGAC TAACAACCTT GGCTAAAACC TTACTGTCGC ACTATCAACA CCCTATCGAA TTAGAGGGTG AAAGCATTAA AGTAGGCCTC AGTATTGGGA TCAGTTTATT TGATGAATTA GATGAGTTTA CCAATGTTTG CGAGCAAGCA GATAAAGCCA TGTACAGCAT TAAAAAACAC GGTAAACATA ACTTCTTATT TTGGTAA
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Protein sequence | MAQQDIITQL QLELEQHKQT IKQLENENNR LTLLNKRVNE QLNATLDGTG LCLWEQHIPT GNLTIFNQQW GHLLGFTREE LPAHISSWKN NLHPEDKDWV IQAFESHVAG NAEIYQAVHR MVHKDGTVAW VSDRGRIIEY GINGEPLRIM GTHIDVTQEK RYEQDLAKLA HRDPLTNLLN RNALIAAFEQ GKSTHSTHQG ALCFIDLDGF KIINDHLGHR YGDSLLIHIA NDIAQICDQL FSTPDTTQTP LHHVARFGGD EFVILAHCND VERLTTLAKT LLSHYQHPIE LEGESIKVGL SIGISLFDEL DEFTNVCEQA DKAMYSIKKH GKHNFLFW
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