| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_3010 |
|---|
| Symbol | |
|---|
| ID | 4279914 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | - |
|---|
| Start bp | 3614822 |
|---|
| End bp | 3616222 |
|---|
| Gene Length | 1401 bp |
|---|
| Protein Length | 466 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 638135830 |
|---|
| Product | putative aminotransferase |
|---|
| Protein accession | YP_751687 |
|---|
| Protein GI | 114564173 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0161] Adenosylmethionine-8-amino-7-oxononanoate aminotransferase |
|---|
| TIGRFAM ID | [TIGR00508] adenosylmethionine-8-amino-7-oxononanoate transaminase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.115201 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACAAACC CATTATCGAC AGATGCGATG AGCCAGCAGC ACAAGCTTGA GCGTCTACAA
GCTGCAGACA AACAGCATTT TATTCACCCA TTTACCGATT CAAAGGGGTT AGCCGTAAAG
GGCACTCGGG TGATAGAACG GGCTGAGGGA GTGTATCTGT GGGATGTAAT GGGTCATAAA
CTGCTAGATG GCATGGCAGG CTTATGGTGT GTCAACGTGG GCTATGGTCG GCAGTCAATT
GTGGATGCTG TCAGCAAGCA AATGCAAAAA CTGCCTTTTT ATAATAGTTT TTTCCAATGT
TCTCATCCTC CAGCGATTGA ATTAGCGCAA AAAATTGCTT CCCTTGCCCC TGCGCACATG
AACAATGTGT TTTTTACTGG GTCTGGCTCT GAGTCAAACG ACACCAACTT ACGCATGGTA
CGACGTTACT GGGATTTAAA AGGCAAACCA AGCAAGAAAA CCATTATCAG TCGGGTTAAT
GCTTATCATG GTTCTACTGT CGCGGGTGCC AGTTTAGGTG GTATGTCGGG CATGCATGAA
CAAGGTGATT TACCTATTCC TGGCGTAGTG CATATTGCGC AACCTTATTG GTATGCCGAA
GGTAAAGATT TATCCCCAGA AGAATTTGGT TTGAAAACTG CACAAGCGCT TGAAGCCAAA
ATTATAGAGC TTGGCGAAGA CAACGTTGCT GCTTTTATTG CCGAACCTTT TCAAGGTGCA
GGTGGGGTGA TTATTCCTCC ATCAACTTAC TGGCCTGAAA TAAAAAGAAT TTTAGCCAAA
TACGATATTT TATTTATTCT TGATGAAGTG ATCAGCGGTT TTGGGCGCAC CGGAAAGTGG
TTTGCGGCTG AGTATTTTGA TTTGCAGCCC GACCTTATCA CCATCGCCAA AGGCATGACA
TCGGGTTATG TGCCAATGGG TGGGGTGATT GTGTCAGACA AAGTGGCTGA GGTTATTAAG
CAAGACTGCG GTGAATTTAC CCACGGTTTT ACTTATTCCG GTCATCCAGT TGCCGCAGCT
GCTGCATTAG AAAATATTCG TATTATTGAA CAAGAAAAAT TAGTTGAACG TGTGGCTAAT
GATACCTCGC CGTATTTACA GTCGCGCTTA CAACAATTGG CCGAACATCC ATTAGTGGGT
GAGGTGCGCG GCGTGGGTTT AGTTGCGGCC ATCGAGTTAG TTAAAGATAA ATCGTTACGA
CAACGGTTTG ATGCCAACGT CGGCGTTGGA ACATATTGCC GCGATGCGTG TATCACCCAT
GGTTTGGTGA TGCGCTCTGT TGGCGACACT ATGATTATTT CACCGCCATT GACCATTAGT
CATGCTGAGA TTGACGAGTT AGTTGCGAAA GCAACGCAGG CGTTAAATGA TACTTATCAA
CACGTAAAAA ACATGGGATG A
|
|---|
| Protein sequence | MTNPLSTDAM SQQHKLERLQ AADKQHFIHP FTDSKGLAVK GTRVIERAEG VYLWDVMGHK
LLDGMAGLWC VNVGYGRQSI VDAVSKQMQK LPFYNSFFQC SHPPAIELAQ KIASLAPAHM
NNVFFTGSGS ESNDTNLRMV RRYWDLKGKP SKKTIISRVN AYHGSTVAGA SLGGMSGMHE
QGDLPIPGVV HIAQPYWYAE GKDLSPEEFG LKTAQALEAK IIELGEDNVA AFIAEPFQGA
GGVIIPPSTY WPEIKRILAK YDILFILDEV ISGFGRTGKW FAAEYFDLQP DLITIAKGMT
SGYVPMGGVI VSDKVAEVIK QDCGEFTHGF TYSGHPVAAA AALENIRIIE QEKLVERVAN
DTSPYLQSRL QQLAEHPLVG EVRGVGLVAA IELVKDKSLR QRFDANVGVG TYCRDACITH
GLVMRSVGDT MIISPPLTIS HAEIDELVAK ATQALNDTYQ HVKNMG
|
|---|
| |