| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_3008 |
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| Symbol | |
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| ID | 4279912 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 3612167 |
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| End bp | 3613303 |
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| Gene Length | 1137 bp |
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| Protein Length | 378 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 638135828 |
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| Product | spermidine/putrescine ABC transporter ATPase subunit |
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| Protein accession | YP_751685 |
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| Protein GI | 114564171 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG3842] ABC-type spermidine/putrescine transport systems, ATPase components |
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| TIGRFAM ID | [TIGR01187] spermidine/putrescine ABC transporter ATP-binding subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.532484 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGTAAACA CCTCGAGCGT CACTAATAAA CCAACCACAA AGACGCAAGA TAAAGTGCTG
CTCAAAATTG AGCGTGTCAG CAAACTTTTC GATGATGTGC GCGCAGTAGA CGACGTCTCG
TTAACCATTA ACCGTGGTGA AATATTTGCA CTACTGGGTG GTTCAGGTTC AGGTAAATCA
ACCTTGTTAC GCATGCTCGC GGGTTTTGAA AAGCCAACAG AAGGGCGTAT TTTTCTTGAT
GGTGTCGACA TTACTGATAT GCCACCGTAC GAACGCCCTA TTAATATGAT GTTCCAATCG
TATGCTTTAT TTCCGCACAT GACGGTTGAA CAGAATATCG CTTTTGGATT GAAACAAGAC
AAAATGCCGA AGGCTGATAT TGCTGTGCGG GTTAAAGAAA TGCTTAAACT GGTGCACATG
GACAAATACG GTAAACGTAA ACCGCATCAG TTATCAGGTG GTCAACGTCA GCGTGTCGCC
TTAGCTCGTT CGTTAGCAAA GCGGCCTAAA TTATTATTAC TTGATGAGCC AATGGGCGCA
TTAGATAAAA AGCTGCGTAC TCAAATGCAG TTAGAAGTGG TCGATATTTT AGAAGCCGTA
GGTGTTACCT GCGTGATGGT AACCCATGAC CAAGAAGAAG CCATGACCAT GGCCGGACGT
ATTTCGATTA TGCATGAAGG TTGGATTGCC CAAACAGGCA GCCCAATGGA CATTTATGAG
TCGCCAGCGA GTCGCATGGT TGCAGAGTTT ATTGGTACGG TTAATTTATT TGAAGGTGAA
ATTATTGAAG ATGAAGTTGA CCACGCGATT ATTAAATCGC CGACTTTATC GCAGCAGTTT
TACATTGGTC ACGGTATTTC AACCAGTCTA GAAAACAAAA ATGTATTCTT GGCCCTACGA
CCAGAAAAAA CCATTATTAC CCGCCAAAAG CCTGAAAGTG AATATAACTG GGCTCACGGC
GTAGTGCATG ACATTGCCTA TCTTGGTGGT TTGTCGGTGT ATTACATTAA GTTAAAAAAC
AACCAAATTG TTCAATGCTC AATGATTAAC CGTGAACGCC GCGCCGATCA CCCAACGTGG
GAAGACGAGG TTTACATCAG TTGGGAAGAC ACCAGCGGGG TTGTATTAAA CTCATGA
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| Protein sequence | MVNTSSVTNK PTTKTQDKVL LKIERVSKLF DDVRAVDDVS LTINRGEIFA LLGGSGSGKS
TLLRMLAGFE KPTEGRIFLD GVDITDMPPY ERPINMMFQS YALFPHMTVE QNIAFGLKQD
KMPKADIAVR VKEMLKLVHM DKYGKRKPHQ LSGGQRQRVA LARSLAKRPK LLLLDEPMGA
LDKKLRTQMQ LEVVDILEAV GVTCVMVTHD QEEAMTMAGR ISIMHEGWIA QTGSPMDIYE
SPASRMVAEF IGTVNLFEGE IIEDEVDHAI IKSPTLSQQF YIGHGISTSL ENKNVFLALR
PEKTIITRQK PESEYNWAHG VVHDIAYLGG LSVYYIKLKN NQIVQCSMIN RERRADHPTW
EDEVYISWED TSGVVLNS
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