| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_2996 |
|---|
| Symbol | |
|---|
| ID | 4279901 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | + |
|---|
| Start bp | 3595767 |
|---|
| End bp | 3597611 |
|---|
| Gene Length | 1845 bp |
|---|
| Protein Length | 614 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 638135816 |
|---|
| Product | RNA polymerase, sigma 70 subunit, RpoD |
|---|
| Protein accession | YP_751674 |
|---|
| Protein GI | 114564160 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
|---|
| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.000465174 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATATCTA TGGATCACAC TCCGCAGTCG CAACTCAAAC TGTTGCTCGC TAAAGGTAAA
GAGCAAGGTT ACTTAACCTA TGCAGAAGTG AACGACCACT TACCTGCAGA CATGGTCGAT
TCCGATCAGA TTGAAGATAT TATCCAGATG ATAAATGACA TGGGTATCCG CGTTTTTGAA
GAAGCGCCAG ATGCCGATGA CATGATGATG TCGGAAGACA ACACAGACGA AGATGCTGCA
GAAGAAGCAG CGGCAGCTCT CGCAACCGTA GAAAGTGAGT TAGGCCGAAC CACAGACCCT
GTCCGCATGT ATATGCGCGA AATGGGCACG GTAGAGCTAC TTACTCGCGA AGGCGAAATT
GTTATTGCTA AACGTATCGA AGAAGGTATC AACACTGTAC AGAGTTCTGT CAGTGAATAC
CCTCAAGCGA TCGCAATGAT CTTAGAGCAA TTCGATAAGT ATGAAGCTGA AGAATTGCGC
TTGTCTGATA TTATCTCTGG ATTTATCAAT CCTGACGACG ATGACGTCGC ACCAACAGCC
ACCAACGTTG GTTCAGAATT AGCAGACTCT AAAAACGATG ATGACGATGA TGACGACGAT
GATGACGATG AGGAAGAGGA AGAAGGCAAC AAAGGACCAG ATCCTGAAGA AGCCAAAGAA
AAATTCACTC AACTCAGAGA AGCCTACGAA AAAAGTTTAG GAATTATTGC CGAAAAAGGC
CGTGATCACC CTGAAGCGAT TGGCTCATTA TTTGTTATTG GCGAATTATT CAAAGAATTC
CGTTTAGTAC CTAAACAGTT TGACCGTTTA GTGAAAAGCA TGCGCAACAT GATGGACCGC
GTACGAATTC AAGAACGTCT AGTCATTAAG CTTTGTGTTG AACACGCTAA GATGCCAAAG
AAAAACTTTA TTAAGGCTTT CACTGGCAAC GAAACAAACT TAGATTGGTT TAACAAAGAA
AAAGAAAGCA CTAAGCCTTA CGCTGAAGGT TTACGCTTGA TCACCGATGA CGTAACGCGT
TGTGTGACCA AACTTGGTGC TATTGAAGTT GAAACAGATT TAACCATCGC AGGCATTAAA
GACATTAACC GTCGTATGTC TATCGGTGAA GCGAAAGCTC GTCGAGCGAA AAAAGAAATG
GTTGAAGCTA ACTTACGTTT GGTTATTTCT ATTGCCAAAA AGTACACCAA CCGTGGTTTA
CAGTTCTTGG ATTTAATCCA AGAAGGTAAC ATTGGTTTGA TGAAAGCAGT AGATAAGTTT
GAATACCGCC GTGGTTACAA ATTCTCGACT TATGCAACGT GGTGGATCCG TCAGGCAATC
ACTCGTTCAA TCGCCGACCA AGCACGTACG ATCCGTATTC CAGTACACAT GATCGAAACG
ATTAACAAGT TGAACCGTAT TTCTCGTCAA ATGCTTCAAG AAATGGGCCG TGAGCCGTCT
CCTGAAGAAT TAGCAGAACG TATGATGATG CCTGAAGATA AAATTCGTAA GGTACTGAAA
ATCGCTAAAG AGCCAATCTC AATGGAAACC CCAATCGGTG ACGATGAAGA TTCGCATTTA
GGTGATTTTA TCGAGGATAC TACCCTCGAG CTACCACTTG ACTCAGCAAC TAGCGAAAGT
CTAAAGAACG CCACACACGA AGTCTTAGCT GGCCTAACAG CCCGCGAAGC AAAAGTACTG
CGTATGCGTT TTGGTATCGA CATGAATACT GACCACACGT TAGAAGAAGT GGGTAAGCAA
TTTGATGTAA CACGTGAACG TATTCGTCAA ATTGAAGCCA AAGCGTTACG TAAATTACGT
CACCCTTCTC GCTCAGAAAT CTTAAAGTCG TTCTTAGACG AGTAA
|
|---|
| Protein sequence | MISMDHTPQS QLKLLLAKGK EQGYLTYAEV NDHLPADMVD SDQIEDIIQM INDMGIRVFE
EAPDADDMMM SEDNTDEDAA EEAAAALATV ESELGRTTDP VRMYMREMGT VELLTREGEI
VIAKRIEEGI NTVQSSVSEY PQAIAMILEQ FDKYEAEELR LSDIISGFIN PDDDDVAPTA
TNVGSELADS KNDDDDDDDD DDDEEEEEGN KGPDPEEAKE KFTQLREAYE KSLGIIAEKG
RDHPEAIGSL FVIGELFKEF RLVPKQFDRL VKSMRNMMDR VRIQERLVIK LCVEHAKMPK
KNFIKAFTGN ETNLDWFNKE KESTKPYAEG LRLITDDVTR CVTKLGAIEV ETDLTIAGIK
DINRRMSIGE AKARRAKKEM VEANLRLVIS IAKKYTNRGL QFLDLIQEGN IGLMKAVDKF
EYRRGYKFST YATWWIRQAI TRSIADQART IRIPVHMIET INKLNRISRQ MLQEMGREPS
PEELAERMMM PEDKIRKVLK IAKEPISMET PIGDDEDSHL GDFIEDTTLE LPLDSATSES
LKNATHEVLA GLTAREAKVL RMRFGIDMNT DHTLEEVGKQ FDVTRERIRQ IEAKALRKLR
HPSRSEILKS FLDE
|
|---|
| |