Gene Sfri_2995 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_2995 
Symbol 
ID4279900 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand
Start bp3593898 
End bp3595625 
Gene Length1728 bp 
Protein Length575 aa 
Translation table11 
GC content43% 
IMG OID638135815 
ProductDNA primase 
Protein accessionYP_751673 
Protein GI114564159 
COG category[L] Replication, recombination and repair 
COG ID[COG0358] DNA primase (bacterial type) 
TIGRFAM ID[TIGR01391] DNA primase, catalytic core 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0193814 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCGATAC CTCGTGATTT TATCAATGAG CTAATAGCTC GAATAGACAT AGTCGATCTC 
ATTGACCGTA AAGTGCCGTT GAAAAAAGCC GGTAAGAACC ATTCGGCTTG TTGTCCTTTT
CATAGCGAAA AATCACCCTC TTTTACCGTC AGCAGAGACA AACAGTTTTA CCACTGTTTT
GGTTGCGGTG CCCATGGCAA TGCTATTGAT TTTGTCATGG AATATGATCG CCTAGAATTT
GTTGATGCCA TTGAAGAACT TGCAGGTCAA CTTGGTCTTG CCGTACCACG AGAGCAAGGC
ACAGGAAAAA GACCAGATCA AGGATTAAGT CGAGACTTAT ACGAACTGAT GGAAGAAGCT
AACCTCTTCT ATCAAAGCCA ACTTAGGCAG CATACAGACA AACAAAAAGT TGTCGATTAT
CTTGAGTTTC GCGGATTATC GAGTGACGTT GTTGAGCAGT TCGGTATTGG GTTTGCCCCC
GATGGTTGGG ATGGTTTACT GGGTCGTTAC AGGCAAAATT TGCCCGCCCA AGATAAATTA
CTAACCGCAG GCATGTTGAT TGCCAATGAT AGCGGTAAAC GGTACGACCG TTTTCGCGAC
AGATTAATGT TCCCAATACG CGACCGTCGT GGTCGTGTGG TTGGATTTGG TGGTAGAGTT
TTGGGTGACG GCACCCCAAA GTACTTGAAT TCTCCAGAAA CGCCCATATT TCATAAGGGT
AATGAACTTT ATGGTTTATA TGAGCTAAAG CAAAAACACC GTGATCCACA ACATGTGTTA
ATTGTTGAAG GGTATATGGA TGTCGTCGCA CTCGCCCAAT TTGGGATTGA TTATGCGGTT
GCATCTCTAG GTACATCGAC TACAGCTGAA CAATTTCAGC TTTTAGTGCG TAGTGCAAAA
CAAGTGGTTT GTTGTTATGA CGGTGACCGC GCAGGCCGCG AAGCAGCTTG GCGTGCACTA
GAAACAGCGC TACCGCTGTT AAAACCGGGT GACCAAGTCA AGTTTATGTT TCTACCGCAA
GGTGAAGACC CTGACACTAT GGTCCGCAAA ATTGGCAAAG AAGCATTCGA AGCATTAATG
CAAAAAGCCA TGTTACTGCC CGAGTTTTTG TTTGACACAT TAAGTGCTAA CCACGGTACC
GATAAAGGGG CATTAGCCAA GCAAGCCATT GCGCTAATCG AAAAGGTACA AGATACCGTC
CTACAGAATT TACTGTTAGA AAATTTAGCA CACAAATTAG GCATGAACAG TAGCGAAGAT
TTAAAGAAAA AATTAGGTTT TACTGTAAAA CAAGCAAAAC CATTAAATGC GAAAGGCTTA
CAAGGTCGTG GCACGCCATT AAGATTGGCC ATTGCCCTGC TGGTCCAAAA TCCAAGTTTA
GGCTTTGGTT TGGCCAAACA GCCTGCACTA GATCGATTAC AGATGACCGG CATAGAATTG
CTCAATCATT TGTTAGATAT AACTCGAGAG CAGACGTTAA ACAGCGCACA ACTACTTGAA
ATGCATAGAG AGCATAATCA AAAAAGCACT CTAATAAAGC TAGCCCAATG GGAACATCAA
GTGGCGGATG AAAACGTATT GCCAGAGTTC AAGCAAACCC TGATTTGGTT AAACAACCAA
TATATTGAAC AACGATATCA GGAATTAAGC CTAAAACAGG CTTTAACGAA AGTTGAAAAA
ATGCAGCTAA CAAAGCTGAT TTCTATAATG AAAGGCATAG CGAAGTAA
 
Protein sequence
MAIPRDFINE LIARIDIVDL IDRKVPLKKA GKNHSACCPF HSEKSPSFTV SRDKQFYHCF 
GCGAHGNAID FVMEYDRLEF VDAIEELAGQ LGLAVPREQG TGKRPDQGLS RDLYELMEEA
NLFYQSQLRQ HTDKQKVVDY LEFRGLSSDV VEQFGIGFAP DGWDGLLGRY RQNLPAQDKL
LTAGMLIAND SGKRYDRFRD RLMFPIRDRR GRVVGFGGRV LGDGTPKYLN SPETPIFHKG
NELYGLYELK QKHRDPQHVL IVEGYMDVVA LAQFGIDYAV ASLGTSTTAE QFQLLVRSAK
QVVCCYDGDR AGREAAWRAL ETALPLLKPG DQVKFMFLPQ GEDPDTMVRK IGKEAFEALM
QKAMLLPEFL FDTLSANHGT DKGALAKQAI ALIEKVQDTV LQNLLLENLA HKLGMNSSED
LKKKLGFTVK QAKPLNAKGL QGRGTPLRLA IALLVQNPSL GFGLAKQPAL DRLQMTGIEL
LNHLLDITRE QTLNSAQLLE MHREHNQKST LIKLAQWEHQ VADENVLPEF KQTLIWLNNQ
YIEQRYQELS LKQALTKVEK MQLTKLISIM KGIAK