Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_2995 |
Symbol | |
ID | 4279900 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | + |
Start bp | 3593898 |
End bp | 3595625 |
Gene Length | 1728 bp |
Protein Length | 575 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 638135815 |
Product | DNA primase |
Protein accession | YP_751673 |
Protein GI | 114564159 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0358] DNA primase (bacterial type) |
TIGRFAM ID | [TIGR01391] DNA primase, catalytic core |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.0193814 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCGATAC CTCGTGATTT TATCAATGAG CTAATAGCTC GAATAGACAT AGTCGATCTC ATTGACCGTA AAGTGCCGTT GAAAAAAGCC GGTAAGAACC ATTCGGCTTG TTGTCCTTTT CATAGCGAAA AATCACCCTC TTTTACCGTC AGCAGAGACA AACAGTTTTA CCACTGTTTT GGTTGCGGTG CCCATGGCAA TGCTATTGAT TTTGTCATGG AATATGATCG CCTAGAATTT GTTGATGCCA TTGAAGAACT TGCAGGTCAA CTTGGTCTTG CCGTACCACG AGAGCAAGGC ACAGGAAAAA GACCAGATCA AGGATTAAGT CGAGACTTAT ACGAACTGAT GGAAGAAGCT AACCTCTTCT ATCAAAGCCA ACTTAGGCAG CATACAGACA AACAAAAAGT TGTCGATTAT CTTGAGTTTC GCGGATTATC GAGTGACGTT GTTGAGCAGT TCGGTATTGG GTTTGCCCCC GATGGTTGGG ATGGTTTACT GGGTCGTTAC AGGCAAAATT TGCCCGCCCA AGATAAATTA CTAACCGCAG GCATGTTGAT TGCCAATGAT AGCGGTAAAC GGTACGACCG TTTTCGCGAC AGATTAATGT TCCCAATACG CGACCGTCGT GGTCGTGTGG TTGGATTTGG TGGTAGAGTT TTGGGTGACG GCACCCCAAA GTACTTGAAT TCTCCAGAAA CGCCCATATT TCATAAGGGT AATGAACTTT ATGGTTTATA TGAGCTAAAG CAAAAACACC GTGATCCACA ACATGTGTTA ATTGTTGAAG GGTATATGGA TGTCGTCGCA CTCGCCCAAT TTGGGATTGA TTATGCGGTT GCATCTCTAG GTACATCGAC TACAGCTGAA CAATTTCAGC TTTTAGTGCG TAGTGCAAAA CAAGTGGTTT GTTGTTATGA CGGTGACCGC GCAGGCCGCG AAGCAGCTTG GCGTGCACTA GAAACAGCGC TACCGCTGTT AAAACCGGGT GACCAAGTCA AGTTTATGTT TCTACCGCAA GGTGAAGACC CTGACACTAT GGTCCGCAAA ATTGGCAAAG AAGCATTCGA AGCATTAATG CAAAAAGCCA TGTTACTGCC CGAGTTTTTG TTTGACACAT TAAGTGCTAA CCACGGTACC GATAAAGGGG CATTAGCCAA GCAAGCCATT GCGCTAATCG AAAAGGTACA AGATACCGTC CTACAGAATT TACTGTTAGA AAATTTAGCA CACAAATTAG GCATGAACAG TAGCGAAGAT TTAAAGAAAA AATTAGGTTT TACTGTAAAA CAAGCAAAAC CATTAAATGC GAAAGGCTTA CAAGGTCGTG GCACGCCATT AAGATTGGCC ATTGCCCTGC TGGTCCAAAA TCCAAGTTTA GGCTTTGGTT TGGCCAAACA GCCTGCACTA GATCGATTAC AGATGACCGG CATAGAATTG CTCAATCATT TGTTAGATAT AACTCGAGAG CAGACGTTAA ACAGCGCACA ACTACTTGAA ATGCATAGAG AGCATAATCA AAAAAGCACT CTAATAAAGC TAGCCCAATG GGAACATCAA GTGGCGGATG AAAACGTATT GCCAGAGTTC AAGCAAACCC TGATTTGGTT AAACAACCAA TATATTGAAC AACGATATCA GGAATTAAGC CTAAAACAGG CTTTAACGAA AGTTGAAAAA ATGCAGCTAA CAAAGCTGAT TTCTATAATG AAAGGCATAG CGAAGTAA
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Protein sequence | MAIPRDFINE LIARIDIVDL IDRKVPLKKA GKNHSACCPF HSEKSPSFTV SRDKQFYHCF GCGAHGNAID FVMEYDRLEF VDAIEELAGQ LGLAVPREQG TGKRPDQGLS RDLYELMEEA NLFYQSQLRQ HTDKQKVVDY LEFRGLSSDV VEQFGIGFAP DGWDGLLGRY RQNLPAQDKL LTAGMLIAND SGKRYDRFRD RLMFPIRDRR GRVVGFGGRV LGDGTPKYLN SPETPIFHKG NELYGLYELK QKHRDPQHVL IVEGYMDVVA LAQFGIDYAV ASLGTSTTAE QFQLLVRSAK QVVCCYDGDR AGREAAWRAL ETALPLLKPG DQVKFMFLPQ GEDPDTMVRK IGKEAFEALM QKAMLLPEFL FDTLSANHGT DKGALAKQAI ALIEKVQDTV LQNLLLENLA HKLGMNSSED LKKKLGFTVK QAKPLNAKGL QGRGTPLRLA IALLVQNPSL GFGLAKQPAL DRLQMTGIEL LNHLLDITRE QTLNSAQLLE MHREHNQKST LIKLAQWEHQ VADENVLPEF KQTLIWLNNQ YIEQRYQELS LKQALTKVEK MQLTKLISIM KGIAK
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