| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_2933 |
|---|
| Symbol | |
|---|
| ID | 4279838 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | - |
|---|
| Start bp | 3522306 |
|---|
| End bp | 3523253 |
|---|
| Gene Length | 948 bp |
|---|
| Protein Length | 315 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 638135753 |
|---|
| Product | sigma E regulatory protein, MucB/RseB |
|---|
| Protein accession | YP_751611 |
|---|
| Protein GI | 114564097 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG3026] Negative regulator of sigma E activity |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.0247512 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTAGGAG TTAGCTTGCG CATTATCCTG CTAGCACTGT TAGTGTTAAC CTTTCCAACA
CACGCTGAAG ATGATTTATC TGCTAAAGCT TGGCTTAAGA ATATGAGCCA AGCAATGCAC
GATAAGCAAT ACAAAACCTC TATTATTCAG CTACAAGCCG ACCATATCCG TCCGCTTGTT
TACATTCATG GCATTGTCGA TAATAAAGAA GTCGCATTAC TTGAATACCT TAATGGCCCT
CCTAAAAATG CAGTGCGAGT GGGTAATACA GTTACGTTCA TAGAACATGA CCAACCGGCT
TACAGTGTTG TCGCTCCTCG TATTCAGGGA ATTTGGCCAG CAGCTTTAGC GGGAGATTTA
AGTCAGCTCG AAAAAGGCTA TCAGTTTGTT ATTGGCGGTC GAGGGCGTAT TGCTGGACGT
CCAGGTCAAA TGATCCGTTT ACTCGCCAAT GATGACAATC GTTATGACGC TCAAGTGTGG
ATTGATATGG ACACTTATTT GCCATTACGT TTTGACTCTC TCAATAAAGA AAAACAATTA
CTTGAACAAA CCATGGTAAT TGAGCTGATT GAATTAACCG AACCTGCGAA CATTTTAATT
GAAGCTGCAA AGCAAGAATG GCCTGCAGTG ATGAACCAAG CGGAACGCAC CGATGGTAAA
AACTGGCAAT TTACTTGGTT ACCAGAAGGA TTTGATGTGG TTGTTCGCGA TCATCACCGT
TTGATCGGTA TTCACGAGCC CGTTGAATAT GTGGCGTTAA CGGATGGATT AGCCAATATT
TCTGTTTATG TCGCGCGAGC TGGAGAAAAT CCAATGCCCA ATGAACTGCT TATTCGTAAT
GGTTTATCCA TGGTAGTCGT TAAGGTAGGT ACGCTTGAAG TTGTTGCTAT TGGTAAGGTT
CCTTCTGAAA CATTAGACAA GATAGCCAAT AGTTTAGTGT TAAAATAA
|
|---|
| Protein sequence | MLGVSLRIIL LALLVLTFPT HAEDDLSAKA WLKNMSQAMH DKQYKTSIIQ LQADHIRPLV
YIHGIVDNKE VALLEYLNGP PKNAVRVGNT VTFIEHDQPA YSVVAPRIQG IWPAALAGDL
SQLEKGYQFV IGGRGRIAGR PGQMIRLLAN DDNRYDAQVW IDMDTYLPLR FDSLNKEKQL
LEQTMVIELI ELTEPANILI EAAKQEWPAV MNQAERTDGK NWQFTWLPEG FDVVVRDHHR
LIGIHEPVEY VALTDGLANI SVYVARAGEN PMPNELLIRN GLSMVVVKVG TLEVVAIGKV
PSETLDKIAN SLVLK
|
|---|
| |