| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_2813 |
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| Symbol | |
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| ID | 4279718 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 3385774 |
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| End bp | 3390672 |
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| Gene Length | 4899 bp |
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| Protein Length | 1632 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 638135631 |
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| Product | multi-sensor hybrid histidine kinase |
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| Protein accession | YP_751491 |
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| Protein GI | 114563977 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG0642] Signal transduction histidine kinase |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATAAAAA TGACCAGACT ATCTAGCTAT AAAAATGCGC TTAAATTGGG TATTGGAGTA
TTTTCTTGTG GCTTAGTCAT CAGTTTTATT ACTGCTTTAA GTGTTAATAA TCAAAATAAC
ACTATCATTA CTCAATCTCT TAAAACGGTG ACAGAGCAAG TTGCTAACAA TATTATTGAT
CGTATCGTAT TGTATCAATA TGGTTTAAGA GGTGCTCGAG GGGTTATTTA TACCGTTGGT
GAAGATAATA TTTCTCGTGA TTTTTTTAAA AAATATAGCT TAACTCGCGA TTTTGAAAGT
GAGTTCCCCG GTGCGCGAGG GTTTGGTTAT ATCCGCCGTG TACCAGCCAA CGATGAAGCG
AGTTTTGTTG CCAAAGCTAA ACTTGATGAT TGGCCCGATT TCAGTGTGCG TCAACTTACT
CCCCATGATG ATGAACGGTA CGTGATTGAC TATATCGAAC CCGTTGAGCG TAATCTCGCC
GCTGTCGGTT TAGATATTGC CTCTGAACAA AACCGCAAAA ATGCCGCACA ACAAGCATAT
TTAACGGGTG AGACACGCTT AACCGGTCCA ATCACGTTAG TGCAGGCGAC TGGTCATCCG
TTACAAGCCT TTCTTATTTT AATGCCCATT TACCGTACTG GACTGACTCC AGCAACCCCG
GCGTTAAGGG AGCAACAAGC TTTTGGTTGG AGTTATGCGC CACTCGTTGC CAATGAAGTT
TTTGAACAGA TTAATTTATC CCGTAAAACC ACTAAACTAT TGGTCAATGA TGTGACCGAT
GCTCAAAATA ATGTCATGTT TTATGAAACA CATGTTGATG AGGTTAATCC ATTAACATCT
TTTGTTGTTA CATTAGATCG TGAAATATTT GGACGTAAAT GGCAAGTGTC GCTAGTGGCT
TACCCTGAGT TTGTCAGCGG TTTGCATTTA AGCTCACCCA AAATTGTGTT TAGTTATGGT
GCGATTGTGA GCTTGTTATT GGGTGGGCTT ATTGGTTTTT ATGGCTACGC ATTAGGTCGT
AAGCGTATCA TTATGGAAGA TAATGAAAGA CGTGCCAATA TTTTAGAGCA TTCGCTTGAT
GCGATTATTA GTTTTGACTG TGATGGTGTT ATTACCAGTT GGAATGATGG TGCGGTAATG
ATGTTTGGTT ATGAAAAACA TGAGGTGATA GGCCTCAAGA AAACAACGTT TATTGTACCA
AACGATGGCT ATGATGCTGA AAATGAGAAA TTTAATCAGG TACTAAATGG TAAATCGTTA
CTAAATTTTG TTAGCCAACA TAAACGAAAA GACAATGAAC TACTGTCAAC ATCGATGACC
TCACTGGCTA TTTATAATGA GTTTGGCAAA ATTATCGGTG TAAGTCAGAC CATTCGAGAT
ATTACGGTAC AGCTGAATGC TGAAAAGCAA ATTTTAAACA TAAATGCCAG CCTTGAACGT
AAGGTTACCG AGCGAACTCA AGCGTTACAA CAAGCCCTGT CAGAAAATAA AACCTTACTT
GATAATATTA ACCAGCAGCT ACTTTATTCT GAAACCGATA AAAATGGCGT TATCTTGGTG
GTAAATGATA ATTTCTGTCA AACATCAGGG TTCACTCGCG AGCAAATGAT TGGTAAGAAA
CATTCGATTT TAAAATCCAA TGAACATGAT CGTGCCTTTT GGAAACAGAT GTGGCAAACC
ATTCACGCAG GCGAGACTTG GCATGAGGAA ATTTGTAACC GTGATAAACA GGGCAATATT
AAATGGCTTG ATACGGTAAT TACCCCGGTG ATGGATGAAA ACGGTAATCT TGTTCGCTGC
ATCGCATTGA GGATTGATAT TACTGAACGT AAAAATAGCC AGTTAGAAAA GAATAAACTC
GCGTCTTTAC TCACTAACGT GCTTGCCGCG GCAACGGAAA TTGCGATTAT TTCAACCGAT
AATGACGGTA TTATTAACAT TTTCAATCGT GGTGCTCAGC TATTGCTTGG GTATCAAGCC
GAGGAGATTG TGGGTAAGCA AAGTCCTGCA ATATTGCATC TACCATCAGA GATCCGTCAA
CGCAGTAAAG AGTTAACCGA GGAGTTTGGC GAAGATATTA GTGCTTTTGA TGTGTTTGTG
TATAAGCCAA GAACGCAAGG GCCTGAAACG CGTACCTGGA CGTATATCCG TAAAGATTTA
TCTCAATGCC AAGTGTCGTT GTCGGTTTCG GCTATGCGCG ATCAAAGTGG AGAGATTGTA
GGATATTTAG GTGTTGCGGT GAACATTGAT CAAATGCTCA AGCAGCAAGA AGAGTTAGTG
TCGGCCAGTA ATCAACTAAG TAAAGCAGCT GAAGTTGCTG AGTTAGGTAT TTGGAATTTA
GATTTAGACA CCGACAACTT ACAATGGAAC GATCGTATGT TTGCAATGTA CGATTACCCA
TTAGCGCTTA CAGAAAAGGG CTTAAATTAC CAGCATTGGC AAAAAAGGGT TCATCCAGAT
GATATTGAAA TGGCAGAACT TGCCTTACAG CAAGCCATTG ACTTGAATAT TCCTTATGAA
CCGACTTTCA GGATCATTAC CAGCTCGAAT CAAATTCGCT ACATTCATGC CGGAGCCCAA
ATTAGTTATG ACAAAACAGG CAAACCTGTG CGGGTGGTTG GGATTAACCG TGACATCACA
GAGCAACGCG AGTTAGAACA AACTTTGCGT TTAGCTAAAC AAGCCGCAGA TGCTGCGAGT
GCGGCTAAAT CAGCATTTTT AGCCAATATG AGTCATGAAA TTCGTACTCC AATGAATGCT
GTGCTAGGCA TGCTACAACT TATTCAGCAT TCTGATATGA GCCGCCAACA AGCTGATTAT
GTCACTAAAG CGGAGAATGC TGCGAAGTCA TTATTAGGGC TATTAAATGA TATTCTAGAC
TTTTCTAAAA TTGATGCTGG TAAGTTAGAA CTTGATTTGC ATCCGTTTCA ACTCGAAACG
TTAATGCGCG AATTAGCGGT GATGTTAGCG GCCAACGTAC ACAGTCAACA TTTAGAAGTC
ATTTTTGATT TAGATCCTGC CATTCCATAT TTGATTGAAG GTGATGAACT TCGTTTGCGA
CAGGTGTTGT TAAATCTTGC GGGTAATGCG ATTAAATTCA CCTCTGAAGG TCATGTTATT
GTTGGGGTAC AGTGTAATGA GTGTACTGCG AATCAAGTGA ATTTAACTAT TTCGATTACT
GATTCTGGTA TCGGAATTAG CCCTGAACAA AGCAGCAAAA TTTTCCAAGG TTTTGTTCAA
GCAGAGTCTT CAACGTCAAG ACGATTCGGC GGTACAGGGT TGGGATTAGC AATCACTAAA
AGTTTAGTTG AGTTGATGGG GGGAGAATTA TCATTATCGA GCCATGTCGG TGAGGGAAGT
CGTTTTTGGT TTGAGTTGAC GTTTAATATT GTTGAAGTGA AGAATAATGA TCTAGATATC
GATTTACTGG GTAAGAATAT TCTGATTGTT GATGACAGTA AAATGAGTCG TAAAATTTTA
TCTAAAACCT TAATGGCCCA TGGTGCTTAT GTTAATGAAG CTCATAATAG TAAACAGGCT
ATCAATCTTA TAGAGCAAAG CTTAAATGCC AGCAGTCACT ATGATGTGAT TATTATGGAT
TGGCGCATGC CCGATATGAA TGGCTTAGAA ACTGCCAATC ATATTCAAGC GATGTTTCCG
GCAGGTAAGG CTCCAGCCAT TATTATGCTG ACAGCATATG GTGCTGAGGT GATGGAACAA
ACTAAACAAT ATCGCCAGCA ACCTTTTGTG AGTATGTTGA CCAAACCTGT TACTGCCAAC
TTAATGCTTG AGGCCGTTTA CCGAGCCATA AATGGTTTAG TTCAGCCTGT GCAATCTAGA
AAAATAACTC ATTTAGTCTT AAAAGGTGTC AGGGTGTTGG TGGTTGAAGA TAATCAGCTT
AACCGCCAAG TTATTGATGA ATTATTACGC CTACAAGGCG CGGTAGTGAC ATTGGCTAAA
GACGGTATTG AGGGGGTTGA TTGGGTTACT AAGTCAAATA ATCAATTTGA TATTGTCATT
ATGGACATGC AAATGCCAGT AATGGATGGA CTTGAGGCTA CGCACCTTAT TCGTGCCGAT
GGCCGATTTA ATGATTTACC TATTTTAGCG ATGACGGCTA ATGCATCACT TGCTGATAAA
ACATTATGCT TAGAGGCTGG TATGGATGAT CATATTGGTA AGCCGATAGA CATGACTCTT
TTGTTACCTT GTATGCTTAG TCTGTTGGGC CAAGATAATA GCGCTTATTA TCATTCAACT
GTCAATAATT CGCCTATTGC ATTACCAGAG GTGATTGATG ATGGTGATGA TGAAGCGATT
ATCGAAAATT CTGATTCTAT TTTGCGTCGT TTTGGTGGAG AGCTTGCATT TTTCATTGAT
GTGAAACATC ATTTTGCATC AGAAATGGCA GAGCAATTGT CATTACTTAC TCAAGCATTT
GCACTACAAG ATAACAGTGC TATCAGTAGT ATTGCTCACA CAATTAAAGG CACCTCTAGC
AATATTGGTG CTAAGCGACT GGCAGCTTTT GCGGCCAAAC TAGAGCAAAA TATAAAAAAC
GCTGTTAATG TTGATTCAGT TGCTTGTTTA AGCCAAATGC AAGGTCAAAT TAATGATAGC
CTGCATATGT TAGATACTCT TTTTCCAGAT GAAAGTGCAG TATTAACAAC TAACACGCTG
GATAATAATG CAATATTGCC GATACAAAGT ATAGAACCCG ATAAAATCAA CCGATTAATG
GAATTATTGG TTGAACAAAA TTTAGATGCC ATTGAGTACC TTGATCGCCT GTTAAGCGAC
GTGGTGCCAG ATAAGCAGTG GTTAAGATTA AAAAACCAAG TGAGCCAACT TGAGTTCTTG
GATGCTGTCG ATACATTAAC ATCGATAATT AAGGAGTGA
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| Protein sequence | MIKMTRLSSY KNALKLGIGV FSCGLVISFI TALSVNNQNN TIITQSLKTV TEQVANNIID
RIVLYQYGLR GARGVIYTVG EDNISRDFFK KYSLTRDFES EFPGARGFGY IRRVPANDEA
SFVAKAKLDD WPDFSVRQLT PHDDERYVID YIEPVERNLA AVGLDIASEQ NRKNAAQQAY
LTGETRLTGP ITLVQATGHP LQAFLILMPI YRTGLTPATP ALREQQAFGW SYAPLVANEV
FEQINLSRKT TKLLVNDVTD AQNNVMFYET HVDEVNPLTS FVVTLDREIF GRKWQVSLVA
YPEFVSGLHL SSPKIVFSYG AIVSLLLGGL IGFYGYALGR KRIIMEDNER RANILEHSLD
AIISFDCDGV ITSWNDGAVM MFGYEKHEVI GLKKTTFIVP NDGYDAENEK FNQVLNGKSL
LNFVSQHKRK DNELLSTSMT SLAIYNEFGK IIGVSQTIRD ITVQLNAEKQ ILNINASLER
KVTERTQALQ QALSENKTLL DNINQQLLYS ETDKNGVILV VNDNFCQTSG FTREQMIGKK
HSILKSNEHD RAFWKQMWQT IHAGETWHEE ICNRDKQGNI KWLDTVITPV MDENGNLVRC
IALRIDITER KNSQLEKNKL ASLLTNVLAA ATEIAIISTD NDGIINIFNR GAQLLLGYQA
EEIVGKQSPA ILHLPSEIRQ RSKELTEEFG EDISAFDVFV YKPRTQGPET RTWTYIRKDL
SQCQVSLSVS AMRDQSGEIV GYLGVAVNID QMLKQQEELV SASNQLSKAA EVAELGIWNL
DLDTDNLQWN DRMFAMYDYP LALTEKGLNY QHWQKRVHPD DIEMAELALQ QAIDLNIPYE
PTFRIITSSN QIRYIHAGAQ ISYDKTGKPV RVVGINRDIT EQRELEQTLR LAKQAADAAS
AAKSAFLANM SHEIRTPMNA VLGMLQLIQH SDMSRQQADY VTKAENAAKS LLGLLNDILD
FSKIDAGKLE LDLHPFQLET LMRELAVMLA ANVHSQHLEV IFDLDPAIPY LIEGDELRLR
QVLLNLAGNA IKFTSEGHVI VGVQCNECTA NQVNLTISIT DSGIGISPEQ SSKIFQGFVQ
AESSTSRRFG GTGLGLAITK SLVELMGGEL SLSSHVGEGS RFWFELTFNI VEVKNNDLDI
DLLGKNILIV DDSKMSRKIL SKTLMAHGAY VNEAHNSKQA INLIEQSLNA SSHYDVIIMD
WRMPDMNGLE TANHIQAMFP AGKAPAIIML TAYGAEVMEQ TKQYRQQPFV SMLTKPVTAN
LMLEAVYRAI NGLVQPVQSR KITHLVLKGV RVLVVEDNQL NRQVIDELLR LQGAVVTLAK
DGIEGVDWVT KSNNQFDIVI MDMQMPVMDG LEATHLIRAD GRFNDLPILA MTANASLADK
TLCLEAGMDD HIGKPIDMTL LLPCMLSLLG QDNSAYYHST VNNSPIALPE VIDDGDDEAI
IENSDSILRR FGGELAFFID VKHHFASEMA EQLSLLTQAF ALQDNSAISS IAHTIKGTSS
NIGAKRLAAF AAKLEQNIKN AVNVDSVACL SQMQGQINDS LHMLDTLFPD ESAVLTTNTL
DNNAILPIQS IEPDKINRLM ELLVEQNLDA IEYLDRLLSD VVPDKQWLRL KNQVSQLEFL
DAVDTLTSII KE
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