Gene Sfri_2780 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_2780 
Symbol 
ID4279686 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand- 
Start bp3345929 
End bp3347017 
Gene Length1089 bp 
Protein Length362 aa 
Translation table11 
GC content43% 
IMG OID638135599 
Productputative RNA 2'-O-ribose methyltransferase 
Protein accessionYP_751459 
Protein GI114563945 
COG category[R] General function prediction only 
COG ID[COG2933] Predicted SAM-dependent methyltransferase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAAACC TATTCCTATT TTGTCGCTCA GGCTATGAAA AAGACTGTGC GGCAGAAATT 
CAACAACGGG CAACTGAATT AAATGTGGGT GGTTTTGTTA AAACCAACAT CAACGATGCC 
TATGTGATCT ATCAATGTTT TGACGATAAT GGTGCCGATA CGTTAGTTAA GGAATTGGCG 
CTTAGTTCAT TAGTTTTTGC GCGTCAGATG TTTGCCGCTG GTGAGTTGTT GAGTGATTTG 
CCTGAACAAG ATCGAGTAGG GCCTATTGTG GCTTCATTGG CCGCACTGTC AAAATGTGGT 
GAGCTACGCG TTGAAACGCC TGACACCAAT GAAGCAAAAG AATTATCTGC ATTTTGTCGC 
AAATTGACAG TGCCGTTACG TCAAGGTTTA AAAAAGAGCG GCGCATTGCT TAACGCTGAG 
AGTGACCGCC GTCCAATTAT TCATGTGTGT TTTATCGGGC CTGGCAAAGC GTATGCGGGT 
TATTCGTTAA GCCACAATAG TTCGCCACAT TTTATGGGTA TTCCTCGGTT AAGAATGGCT 
GCAGATGCGC CTAGTCGTTC AAGCCTTAAG TTAGACGAAG CTTTTGGAGC CTTTTTAACT 
AAAGAAGAAC AAGAAACACG TTGTCGTAGT GGGTTAAATG CTGTTGATTT AGGCGCTTGT 
CCTGGTGGTT GGACTTACCA ATTAGTTCGC CGTGGGATGA TGGTTGCTGC TGTTGATAAC 
GGTCCAATGG ATCCAAAATT GATGGAAACA GGCCAAGTGA AGCATTACCG TGCAGATGGT 
TTTCGTTTTG AGCCACCGCG TAAAAATGTG TATTGGTTAG TGTGCGATAT GGTTGAAAAG 
CCAGCCCGAG TTGCTGAATT AATGGAAGCA TGGGCAATTA ATGGTTGGTT TAAAGAAGCT 
ATTTTTAATC TTAAGTTACC CATGAAAAGC CGCTATAAAG AAGTTAGCGT GATTTTAGAA 
ACCATTGGTG CCATTTTAAC TGAAAATGAA ATTGATTTTA AAATGCAGTG TAAGCACCTT 
TATCATGACC GCGATGAAGT GACCGTGCAT TTATGGATAT TCCCTGAAAA GGGTGTGAGC 
TACGCATAA
 
Protein sequence
MKNLFLFCRS GYEKDCAAEI QQRATELNVG GFVKTNINDA YVIYQCFDDN GADTLVKELA 
LSSLVFARQM FAAGELLSDL PEQDRVGPIV ASLAALSKCG ELRVETPDTN EAKELSAFCR 
KLTVPLRQGL KKSGALLNAE SDRRPIIHVC FIGPGKAYAG YSLSHNSSPH FMGIPRLRMA 
ADAPSRSSLK LDEAFGAFLT KEEQETRCRS GLNAVDLGAC PGGWTYQLVR RGMMVAAVDN 
GPMDPKLMET GQVKHYRADG FRFEPPRKNV YWLVCDMVEK PARVAELMEA WAINGWFKEA 
IFNLKLPMKS RYKEVSVILE TIGAILTENE IDFKMQCKHL YHDRDEVTVH LWIFPEKGVS 
YA