Gene Sfri_2718 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_2718 
Symbol 
ID4279624 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand
Start bp3268802 
End bp3270598 
Gene Length1797 bp 
Protein Length598 aa 
Translation table11 
GC content40% 
IMG OID638135537 
Productperiplasmic sensor signal transduction histidine kinase 
Protein accessionYP_751397 
Protein GI114563883 
COG category[T] Signal transduction mechanisms 
COG ID[COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCTTTCAT TCTCGACTAC CAAAAAACGT AAAATTGTAC TGAGCATCAT GCTCATCATC 
GGGTTATTAC TGACCCTAAA AGTTACGTAT TGGTATTTAC TTGAACAGGG CACAAAGTCC
ATTGCTGAAC AATCTGAAAA ACAAATCAAT GAACTGGTAA TTTTTATTGA TAACGCCCTT
TCACACTACG AAAATATTCC AGCAGTGCTC GCGCAAAATC CCATCTTAGA GCAAGGGTTA
CTTGATCAAC GCAATCCTCA AACAATCGAA AAACTTAACG CTTATTTATC TGAATTACAG
CAAGTTACAG AGTCGTCAGA TATTTACCTT ACTGATGCGC TCGGAGTTGC TATTGCCGCC
AGCAATTGGG ATGTACCCAA CTCTTTTATA AATCATGATT ATTCATTTAG GCCCTACTTT
ATTGATGCTA TATCAGGAAA GTCTGGACGA TATTATGCAG TCGGTACCTC ATCCAATAAG
CGCGGATTCT ACTTTGCTAA TCCGGTATAT CACAAGGGAG TGGTATTGGG TGTAGTGGTT
GTGAAAGTTG ATATAAGTTT GATTGAACAA CAAAGTAGTG GCATTGCCAT CGCAAGCCAA
TATGAGTTTA TGATTAGCGA TCCTGACAAT ATAGTGTTTC TTTCAAGCAT TAATAGTTGG
CGATTTAATT CATTAACGCC GCTAACACAG GCAAAACGTT TTGCACTTAA TTCATCAAAA
CGCTATGCAA ACCGACCCAT TGGTGAGCTT AGCATTACCC CTAATTTTGC CTTAGGTGAG
TCAAGCACGA CTCAGGTATA CCAAATCTCG TCTTCTGAAG GCAAAGAGAA GTATTTAGAA
CGCCACCAGT TAATGCCTAA TGCTAACTGG AATGTACATA TTCTAGCCCC CATGAAACCG
TTATATGAGT CTTTACCGCC TATTATGTTG CTAGCGGCGA CACTTTACTT ATTACTGGCT
TTGTTTATTA TTTACAGCTT AGAACGAAGA AAAAACTTTC TTCGGATGCG TCAAGCCCAA
AACCTATTAG AACAACGCGT GAAAGAACGC ACATTAGAGT TAGAACAAGC CAACACTCAA
TTAAAAGACA CTCAAGACGA GCTCATCCAA GCGGCAAAAC TCACGGTCAT AGGCAGTCTT
TCCGCCAGCA TAAACCATGA ACTCAATCAA CCGCTGGCCG CTCTGCGCAG CTATGCACAA
AACACTCAAA CCTTTATTGG CCGTAATATG ATTGAAGATG CCAGTAGCAA TATCAAAATC
ATGATAGAAC TAACTGATCG GCTTGCAGAT ATTATTGGTC AGTTTAAAAG CTTTACACGT
AAATCTCAGG GTAAAGACAA CGCTACTGAA ATTAATCAAT CAATTGAGCA AGCACTTACC
ATTGTTCAAC CTGAAATGGA TAAACAAGGC GTTAAGTTGT CGCTTAAATT ATTAACGGGC
AAATGCCAAA TATGGGGTGA CAGCGTCAGA TTACAACAAG TACTGGTTAA CCTTATTAGC
AATGCTATCG TTGCTATGCA TCAATCCACT GAGCGACAAT TGCAAATCAA AGTCTATTGC
GACAGTAAGG TCAATATAAG TATCCAAGAC AGTGGTCCTG GTGTAAGAGA AAGCCAGATG
AACAAAATTT TTGAACCTTA CTATACCACC AGTGAGCGTC AAGGATTGGG CTTAGGGTTG
TCCATCTCGC AGCGGATTAT TGAGTCAATG CAAGGTTCTA TTACTGTCGA GAACGCCATA
CCCGGTGGGG CTATTTTTCA TATCATTTTG CCACTTTATT TACGCGAGGA AGTGTAA
 
Protein sequence
MLSFSTTKKR KIVLSIMLII GLLLTLKVTY WYLLEQGTKS IAEQSEKQIN ELVIFIDNAL 
SHYENIPAVL AQNPILEQGL LDQRNPQTIE KLNAYLSELQ QVTESSDIYL TDALGVAIAA
SNWDVPNSFI NHDYSFRPYF IDAISGKSGR YYAVGTSSNK RGFYFANPVY HKGVVLGVVV
VKVDISLIEQ QSSGIAIASQ YEFMISDPDN IVFLSSINSW RFNSLTPLTQ AKRFALNSSK
RYANRPIGEL SITPNFALGE SSTTQVYQIS SSEGKEKYLE RHQLMPNANW NVHILAPMKP
LYESLPPIML LAATLYLLLA LFIIYSLERR KNFLRMRQAQ NLLEQRVKER TLELEQANTQ
LKDTQDELIQ AAKLTVIGSL SASINHELNQ PLAALRSYAQ NTQTFIGRNM IEDASSNIKI
MIELTDRLAD IIGQFKSFTR KSQGKDNATE INQSIEQALT IVQPEMDKQG VKLSLKLLTG
KCQIWGDSVR LQQVLVNLIS NAIVAMHQST ERQLQIKVYC DSKVNISIQD SGPGVRESQM
NKIFEPYYTT SERQGLGLGL SISQRIIESM QGSITVENAI PGGAIFHIIL PLYLREEV