| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_2716 |
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| Symbol | |
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| ID | 4279622 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 3266603 |
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| End bp | 3267304 |
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| Gene Length | 702 bp |
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| Protein Length | 233 aa |
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| Translation table | 11 |
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| GC content | 38% |
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| IMG OID | 638135535 |
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| Product | tripartite ATP-independent periplasmic transporter DctQ |
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| Protein accession | YP_751395 |
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| Protein GI | 114563881 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG3090] TRAP-type C4-dicarboxylate transport system, small permease component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.00307588 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCATTATT GCATCAGTAC CACCTTTTTT TATTCAAGGA GTATGACCGT GATTTCAAGA
CTATTTGGTT ATTTTGAAGA AGGGTTCCTT AATTTATTAA TTACATTAAT GACGTTGCTG
GTTTTTGGCG AAGTTATTGC CCGTTTCTTT TTTAATACCG GTTTTTTATG GATCCAAGAA
CTGACCCTTA CTCTTTGTGG TTGGTTTGTA CTATTTGGCA TGTCCTATGG CGTGAAAGTA
GGAGCACATA TTGGTGTTGA TGCGTTTGTG TCTAAGCTAT CTGGTAAGCC ACAGAAAGCG
GTCGCTATCT TTGCGTGCCT GTGTTGCATT ATTTACTGCG GAATGTTTTT AAAAGGAGCT
TGGGACTACC TAAGCCAAAT GTACCAAATT GGTATTCCAA TGGAAGACAT CGACTTTCCT
GCATGGTTTA TTCATCAATT GGATCCAGAT TTTGCTTGGG AAACATTGCG CATCGATATA
GAAGATGGCG CTGTTCCTAT TTGGTTATCT CAAAGTATTT TAATTATCGG ATTTTCAATG
CTCACATGGC GTTTTATAGA ATTATTTATC GCTATTTTGC GCAATAAAGC TGTTGGTTTC
CAACTGGCCG ATGAAGCAAA AGACAGCATG CATTTAATCG ATGAAGCTGC GCTATCCACA
TCATCAGAAC AACTAGAAAA AAATGATAAG GAAGCGAAAT AA
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| Protein sequence | MHYCISTTFF YSRSMTVISR LFGYFEEGFL NLLITLMTLL VFGEVIARFF FNTGFLWIQE
LTLTLCGWFV LFGMSYGVKV GAHIGVDAFV SKLSGKPQKA VAIFACLCCI IYCGMFLKGA
WDYLSQMYQI GIPMEDIDFP AWFIHQLDPD FAWETLRIDI EDGAVPIWLS QSILIIGFSM
LTWRFIELFI AILRNKAVGF QLADEAKDSM HLIDEAALST SSEQLEKNDK EAK
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