| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_2715 |
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| Symbol | |
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| ID | 4279621 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 3265560 |
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| End bp | 3266579 |
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| Gene Length | 1020 bp |
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| Protein Length | 339 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 638135534 |
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| Product | TRAP dicarboxylate transporter, DctP subunit |
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| Protein accession | YP_751394 |
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| Protein GI | 114563880 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component |
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| TIGRFAM ID | [TIGR00787] tripartite ATP-independent periplasmic transporter solute receptor, DctP family |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.000933421 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAAAAT CGACCAGTAC CTTTACACAT CCACTCAAGT CAATTGCTAA ACTAGCGACT
ATTGCTACTA TTCTTGCCGC GAGCTTTAAT GTTTTTGCTG AACCTGTAGA AATTAAATTT
TCGCATGTTG TTGCGGAAAA TACTCCAAAA GGACAAATGG CACTTAAGTT TAAAGAATTA
ATTGAGCAAC GTTTACCAGG TGAATATGTT GTTAACGTAT TTCCTAACTC ACAGTTATTT
GGGGATAACA ATGAGCTAGC AGCACTTCTG CTAAACGATG TGCAATTTGT GGCACCATCA
TTATCTAAGT TTGAGCGCTT TACCAAAAAA CTACAGATTT TCGATTTACC TTTCTTGTTT
GAAGATATGG CCGCAGTTGA TCGTTTTCAG CAATCAGATT CAGGCCAAAA ATTATTAAAC
GCGATGAACC GTAAAGGCCT TGTTGGTCTA GGTTATCTTC ACAACGGTAT GAAGCAGTTT
TCTGCGAACG ATCCTTTGGC ATTACCAAAA GATGCGAATG GCAAAAAGTT CCGTATTATG
GCATCTGACG TTATTGCAGC TCAGTTTGAT GCTGTTGGTG CTATTCCAGT TAAAAAGCCC
TTCTCTGAAG TGTTTACTCT GCTACAAACA CGCGCTATTG ATGGTCAAGA AAACACTTGG
TCAAATACCT ATTCAATGAA ATTTTATGAG GTGCAAAGTC ACATCACAGA AAGTAATCAT
GGCGTTTTAG ATTATATGGT AGTGACCTCA AATACCTTCT GGAAAGGTCT ACCAGCTGAT
AAACGTGCCA TCTTTAAATC ATCACTTGAT GAAGCGATTG CTCTTGGTAA TAAAATTGCT
TCAGAAAAAG ATAACCAAGA TAGACAAGCG ATTATTGATT CTAAGCGTTC AGAACTAGTC
ACGTTAACGC CTGCTGCACG CCAGCAATGG GTTAACGCAA TGAAACCAGT TTGGGCTAAG
TTTGAAGATC AAATTGGTAA AGACATGATT GATGCAGCAC AAGCAGCTAA TACTAAATAG
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| Protein sequence | MKKSTSTFTH PLKSIAKLAT IATILAASFN VFAEPVEIKF SHVVAENTPK GQMALKFKEL
IEQRLPGEYV VNVFPNSQLF GDNNELAALL LNDVQFVAPS LSKFERFTKK LQIFDLPFLF
EDMAAVDRFQ QSDSGQKLLN AMNRKGLVGL GYLHNGMKQF SANDPLALPK DANGKKFRIM
ASDVIAAQFD AVGAIPVKKP FSEVFTLLQT RAIDGQENTW SNTYSMKFYE VQSHITESNH
GVLDYMVVTS NTFWKGLPAD KRAIFKSSLD EAIALGNKIA SEKDNQDRQA IIDSKRSELV
TLTPAARQQW VNAMKPVWAK FEDQIGKDMI DAAQAANTK
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