| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_2654 |
|---|
| Symbol | |
|---|
| ID | 4279561 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | - |
|---|
| Start bp | 3184412 |
|---|
| End bp | 3186556 |
|---|
| Gene Length | 2145 bp |
|---|
| Protein Length | 714 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 37% |
|---|
| IMG OID | 638135453 |
|---|
| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
|---|
| Protein accession | YP_751333 |
|---|
| Protein GI | 114563820 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCACAAGA ATACGATAAG CCAAGAGGTT AATGAGTTAG TTTTAGATGC GACTAATGTT
GGCGTCTGGG ATTGGCGTGT TGAAAATGAT GGTCTTGTTT GTAATGAACG TTGGGCTGAG
ATTATAGGGT ATACCTTATC GGAGTTAATG CCTGTTGATT ACCAAACTTG GCTAGATGTA
TTACACCCAG ATGATTTGCC TAAGGCAATT AAAAATTATG ATTACCACTG TCAAGGCCAA
AGCGAACTTT GTGAGTTAGA AGTTCGTTTA AAACACAAAA GCGGTCATTA TGTTTGGGTA
TTGTCTACAG GTAAAGCTAT TGCATGGGAT GTTGAAGGCA AACCGACACG AATGATTGGC
ATGCACCAAG AAATAACCTT TCGTAAGAGG CAGGAAGAAC TACTTGCAAC CACAACCGAG
TTATTGAGAG AATCTCAAGA GATAGGCAAG CTAGGTGGCT GGCAACTCAA CTTGCATAAC
GGTGACTTGA TTTGGACAGA TGAAACTTAC CGAATTTATG AAACAACTCC GCAAGAATAT
ATTCCTACCG TTGAAATGGG GGTAAGTTAT TTATTACCCG ATTCCAAAAA ATTATTCCAA
GAAGCGCTTG ATGCTGCTAT TCAACTTGGC GAAGAGTATG ACTTAGAGCT TGAAACTTAT
ACCACGAAAG GACAAAAGAT TGACGTTAGA ACGACCTGTC ATGTTACATA TGTCGATGGT
GTTGCTGAAA AATTAAGTGG TATATTTCAA GACATTACCG ACGAAAAAAA TAATCAACGC
AAACTTGAAA AAAGTAATCA GGTATTAAAA GAAGTAAATG AGAAGTTAAA GTTTGCAGCG
AATTATGATC CACTTACACA TTTGCCAAAC AGAAATTTGT TAGCTGATCG AATGCAGCAA
GCGCTTATCA AAGCGCAGCG TAATAGCAAA CAAATAGCTA TAGCCTTCCT AGACTTGGAT
GGCTTTAAAG AGGTAAATGA TGCTTACGGT CATGATATAG GAGATGAGTT CCTTTGCCTT
ATTGCAAATA GGTTTAAAAC TGCAATACGA GAGGATGATA CTCTTGCCAG GTTTGGTGGC
GATGAGTTTG TTTTGATTCT TGATGATTTA GACAGTCATC AAGAAGCATC AGAAATATTA
CAGCGAATAC TTTCTTCAAT TACAGAAATA TTTATTATTG AAAATAAGCG TCTTTCTATA
ACGGTGAGTA TTGGAGTGAC GTTTTTCCCG CAGGATAATA GTCACGCAGA CATACTTATT
CGTCATGCTG ATCAGGCTAT GTATAGGGCT AAAGAGCAGG GAAAGAATTG CATTCATGAA
TTTGACTTTG AAAATGATGT AGCGATAAAA CTCCAGTATC GAGAGTTAGA ATACATAATC
AATGGATTTA ATAACAATGA GTTTTTGTTA TTCTACCAAC CAAAAATCAA TATGGAAAGT
AATGAAATCA TAGGTTTAGA GGCCCTTATT CGTTGGCAAC ATCCGACAGA AGGTCTTTTG
TCACCATTTC GCTTTTTGCC CTACATTGAA GAAGAACCTC TAGCAATTGA GTTAGGTAAA
TGGGTAATTG ACCAAGCAAT AAAGCAGCAT AATGAATGGC GACGCTTAGG AATAGTTATA
CCTATCAGTG TCAATGTCAG TCCATTACAA CTTCAGCATG AAGATTTCAT TAAACAATTA
AATGAAATCT TATTTCTCAA CACTAGTTTT CAAGCGGGTC AGCTTGAATT TGAAATTTTA
GAATCCAGTA TTATTAAAGA TACTCAGCAC ATCGCTGAGG TTATTAGTCA ATGTAAACAG
TTAGGGATAC GTTTTTCGTT AGATGATTTT GGTACGGGGT TTTCATCTTT AAGCTATTTG
AGAAAGTTAA AGACTGATGT TATAAAAATA GATCAATCTT TTGTCATTGA CATGTTAGAT
GATATGGATG ATCAAGCCAT TGTAAAAAGT GTCATTGAAT TATCGAAGAC CTTCGGTCGT
TCTGTGATAG CAGAGGGGGT TGAAACCCAA GAGCATGGTC GGCAATTACT TAAAATGGGA
TGTCAATTAG CACAAGGTTT CGGTATAGCA AGACCAATGC CAGCAAGTTC AATCCCTGAG
TGGATTAATT TATGGAATGC GTCTCCTCCT TGGATTTGTA AATGA
|
|---|
| Protein sequence | MHKNTISQEV NELVLDATNV GVWDWRVEND GLVCNERWAE IIGYTLSELM PVDYQTWLDV
LHPDDLPKAI KNYDYHCQGQ SELCELEVRL KHKSGHYVWV LSTGKAIAWD VEGKPTRMIG
MHQEITFRKR QEELLATTTE LLRESQEIGK LGGWQLNLHN GDLIWTDETY RIYETTPQEY
IPTVEMGVSY LLPDSKKLFQ EALDAAIQLG EEYDLELETY TTKGQKIDVR TTCHVTYVDG
VAEKLSGIFQ DITDEKNNQR KLEKSNQVLK EVNEKLKFAA NYDPLTHLPN RNLLADRMQQ
ALIKAQRNSK QIAIAFLDLD GFKEVNDAYG HDIGDEFLCL IANRFKTAIR EDDTLARFGG
DEFVLILDDL DSHQEASEIL QRILSSITEI FIIENKRLSI TVSIGVTFFP QDNSHADILI
RHADQAMYRA KEQGKNCIHE FDFENDVAIK LQYRELEYII NGFNNNEFLL FYQPKINMES
NEIIGLEALI RWQHPTEGLL SPFRFLPYIE EEPLAIELGK WVIDQAIKQH NEWRRLGIVI
PISVNVSPLQ LQHEDFIKQL NEILFLNTSF QAGQLEFEIL ESSIIKDTQH IAEVISQCKQ
LGIRFSLDDF GTGFSSLSYL RKLKTDVIKI DQSFVIDMLD DMDDQAIVKS VIELSKTFGR
SVIAEGVETQ EHGRQLLKMG CQLAQGFGIA RPMPASSIPE WINLWNASPP WICK
|
|---|
| |