Gene Sfri_2592 details

Gene Information

• Locus tag: Sfri_2592
• ID: 4279499
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella frigidimarina NCIMB 400
• Kingdom: Bacteria
• Replicon accession: NC_008345
• Strand: -
• Start bp: 3098688
• End bp: 3100565
• Gene Length: 1878 bp
• Protein Length: 625 aa
• Translation table: 11
• GC content: 42%
• IMG OID: 638135385
• Product: PpiC-type peptidyl-prolyl cis-trans isomerase
• Protein accession: YP_751271
• Protein GI: 114563758
• COG category: [O] Posttranslational modification, protein turnover, chaperones
• COG ID: [COG0760] Parvulin-like peptidyl-prolyl isomerase

Plasmid Coverage information

• Num covering plasmid clones: 5
• Plasmid unclonability p-value: 0.00114434
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTTAGAAA AAATTCGTGA AGGATCACAG GGGATTGTTG CTAAAACAAT TCTAGTACTT 
GTGATACTTT CTTTTGCTTT TGCCGGTGTG AGCAGTTATT TAGGCTCTAA CACGGGTGTA 
CCTGCTGCAG TTGTTAATGG TGACGAAATT GGCGCCAACG AACTTGAACA GGCTTTTCAA 
AATGAACGCT CGCGTATTGA GCAACAGCTA GGCGAAATGT TTACTGCATT AGCGGCTGAC 
GACTCTTACA TGAACGGAAT TAAGCAAGGT GTATTGGACC GTTTAATTGC CGATAAACTC 
ATCGACCAGG CAGCCAACAA ATTGGGCCTA CGTGTATCAG ATGAGCAAAT CAAGAAAGCG 
ATTATCGAAG AGCCTGCATT TCAAACTGAC GGTCAATTTG ATAATGAACG CTACCTTGCG 
GTACTGCGTC AACTAGGTTA TCAAACCACA AGTTTTAGAA ACATGATGCG TGTAGATATG 
ACTCGTCGTC AGTTATTAAA CGCGCTTGTT GGTAGTGAGT TTGTTCTTGA TGGCGAAGCT 
AAACAGCTTG CAGAAGTTCA AGGCCAAACC CGTGATATTC GCTACTTAGT CGTCGACTCA 
ACACCGTTTT TATCAACAGT GTCAGTCGCA GACGAAGAAG CTCAAAGCTA TTATGATGCT 
AATATTTCGC AATACATGAG TCCTGAAAAA GTCAGCCTTG AGTATGTTGA ACTGAATGTT 
GCTGACATGG CTAAAAGCAG CGAAACCTCT GATGAAGAAG TGAAAACTTA TTACGAAGAG 
AATAAAGCAC AATATCAAAC GGCTGAAAAA CGCCTTGCTG CGCATATTTT TGTCGCCGCA 
ACTGATGATG ACAGTGCAGA TAAAGCTAAA GCTGACGCCA TTGAAGCCAA GTTAACAGCG 
GGTGAAGATT TTGCTGATGT AGCAAAAGCT GATTCTGATG ATCAACTTAG TGCCCAACAG 
GGTGGTAAGT TAGATTGGTT TGAACAAGGT GTAATGGATC CTGCATTTGA TGAAGCACTT 
TTTGGACTGC AAAAAGATCA AGTCTCGTCA ATTGTGAAAA GTGAATTTGG TTACCACATT 
ATTAAGCTGC TTGATTTACA AGCTAGCCAA GCAACCGCTT TTGAAAATGT TAAAGCGAAA 
ATTGTTGCTC AGCTACAAGA AAAGAAAGCC TTAGATGTGT TTTATAGCTT ACAAACTAAG 
TTAGCTGATA CCAGTTACGA AATCCCTGAT ACTTTAGCTG AAACTGCGCA AGCAGTTAAT 
GCAAAAGTAC AATCAACGCA GTTATTCTCG CGTGATGACG TACCAGCTAA ATTTAACAAT 
CCTGAGTTTA TCAAAGCTGC ATTTTCTGAC CAAGTGTTAG CAAGTGGTTT GAACAGCGAT 
GTGATTGAAC TTGCGCCAAA CCATGTAGTG GTTATCCGCA TGAAAAAGCA TCAAACAGCT 
GGCGTCATGA GCTTTGATGA AGTCAAAGCA GGTATTGTTG AGCGTTTGAA GCAAGATAAA 
GCGAATGACG GTGCTCGCGA CAAAGCTGCT GAATATATGG CTCAGTTAAA AGCGGGAAAT 
GACAAGCTAA CAGGTGCTTC ATTGACGACG TTAGCTAAAT TAGGTCGCTT TAATCAGGAT 
ATTGACCAAG CTATCACCAA CAAAGCCTTC AAGATTGCTG CTCCTGCTGA AAATAGTGTC 
ACAATTGATA CTGCAGCATT AGCGACGGGT TATGCGGTTA TTGTTGTGGA TAAAGTTAAT 
AAAGCTGAAG GCATTAATGA CAACCTAATC AATACGCTTA AACAGCGTAT AGCACCTCAA 
TACAGCGAAG CTGATTATCG TGCCGTGGTT GCCTCACTTA AAGCTGATGC TGAAATTGAG 
TATCCAGTGG CCGACTAA 

 

Protein sequence

MLEKIREGSQ GIVAKTILVL VILSFAFAGV SSYLGSNTGV PAAVVNGDEI GANELEQAFQ 
NERSRIEQQL GEMFTALAAD DSYMNGIKQG VLDRLIADKL IDQAANKLGL RVSDEQIKKA 
IIEEPAFQTD GQFDNERYLA VLRQLGYQTT SFRNMMRVDM TRRQLLNALV GSEFVLDGEA 
KQLAEVQGQT RDIRYLVVDS TPFLSTVSVA DEEAQSYYDA NISQYMSPEK VSLEYVELNV 
ADMAKSSETS DEEVKTYYEE NKAQYQTAEK RLAAHIFVAA TDDDSADKAK ADAIEAKLTA 
GEDFADVAKA DSDDQLSAQQ GGKLDWFEQG VMDPAFDEAL FGLQKDQVSS IVKSEFGYHI 
IKLLDLQASQ ATAFENVKAK IVAQLQEKKA LDVFYSLQTK LADTSYEIPD TLAETAQAVN 
AKVQSTQLFS RDDVPAKFNN PEFIKAAFSD QVLASGLNSD VIELAPNHVV VIRMKKHQTA 
GVMSFDEVKA GIVERLKQDK ANDGARDKAA EYMAQLKAGN DKLTGASLTT LAKLGRFNQD 
IDQAITNKAF KIAAPAENSV TIDTAALATG YAVIVVDKVN KAEGINDNLI NTLKQRIAPQ 
YSEADYRAVV ASLKADAEIE YPVAD