| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_2553 |
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| Symbol | |
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| ID | 4279461 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 3057523 |
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| End bp | 3060012 |
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| Gene Length | 2490 bp |
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| Protein Length | 829 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 638135347 |
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| Product | nitrate reductase catalytic subunit |
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| Protein accession | YP_751233 |
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| Protein GI | 114563720 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG0243] Anaerobic dehydrogenases, typically selenocysteine-containing |
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| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence
[TIGR01706] periplasmic nitrate reductase, large subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.4401 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATAGAC GCGATTTTAT GAAAGCAAAT GCCGCTATCG CAGCGGCAAG TGTTGCAGGA
TTAGCACTAC CTACAAGTGC AAGCAACCTG ATCACTAGCT CAGAACAAAC CAAATTAGAA
TGGAACAAAG CACCTTGTCG TTTTTGCGGT ACAGGTTGTT CAGTTATGGT TGCCACCCGT
GACGGTAAAG TTGTTGCAAC TCATGGTGAT GCCAAAAGTG AAGTTAACCG CGGCTTAAAC
TGCATTAAGG GCTATTTCCT TTCTAAAATT ATGTATGGTC GTGATCGTCT GCAAACGCCA
ATGTTGCGTA TGACTGATGG TAAATATGAC AAGCATGGCG AATTCACTCC TATTACATGG
GAAAAAGCGT TCGACACTAT GGCCGAACGT TGGAAAGCGA CCATAAAAGC CAAAGGCCCA
ACTGCAGTTG GTATGTTTGG TTCTGGTCAG TGGACCGTAT GGGAAGGTTA TGCAGCCGTT
AAGTTAATGA AAGCTGGCTT TGGTTCAAAC AACATCGATC CAAACGCACG TCATTGTATG
GCATCTGCGG TAGGTGGCTT TATGCGTACC TTCGGCATTG ATGAACCAAT GGGTTGTTAT
GACGATATGG AAGCGGCTGA TGCGTTTGTG CTTTGGGGCT CAAACATGGC AGAAATGCAC
CCAATTTTGT GGACTCGTGT AACCGATCGT CGTTTAAGTG CTCCACACGT TAAAGTTGCT
GTGTTGTCGA CCTTTGAACA TCGTTCATTT GACCTTGCTG ATTTACCGAT TGTATTCACG
CCACAAACTG ATTTGGCGAT GCTTAACTTT ATTGCCAATT ACATTATCCA AAATGGCAAA
GTGAATAAAG ATTTCATCAA AAAGCATGTT AACTTCCGCA AGGGAACCAC TGATATTGGC
TATGGTTTAC GTCCAACGCA TCCATTAGAA ATGAAAGCTA AAAACGTTGC GACAGCAGGT
GACTCTACAC CGATTGATTT TGACGAATTT GCTAAATTTG TGGCTGATTA TGATGTTGAA
TCTGTCAGTA AGTTGTCTGG TGTACCAGAA CATAAGCTTA TCGAGTTGGC AGAGCTTTAT
GCTGATCCAG ATCGTAAAGT GACTTCATTC TGGACCATGG GCTTTAACCA ACATACTCGT
GGTGTGTGGT GTAATAACCT GATTTATAAC ATTCACTTGT TAGTCGGTAA AATTTCTACT
CCAGGTAACA GCCCATTCTC ATTAACGGGT CAACCTTCTG CTTGTGGTAC AGCACGTGAA
GTGGGTACAT TCTCACATCG CTTACCTGCT GACATGGTGG TGACTAACCC TGAGCACAGA
AAACATGCTG AAGAAATTTG GCGTATTCCG AGTGGTATTA TTCCTCCTAA ACCTGGCTAC
CATGCGGTAG AGCAAAACCG TCGCTTAAAA GATGGCGACC TAAATTGCTA CTGGGTTCAA
GTGAACAACA ATATCCAAGC TGGCGCCAAT ATTAACGAAG AAGGTTTACC GGGTTACCGT
AATCCAGAAA ACTTCATCGT AGTGTCAGAC GCTTACCCAA CCGTGACGAC TCAAGCTGCC
GATTTGATTT TACCAACAGC TATGTGGGTA GAAAAAGAAG GTGCTTATGG TAATGCAGAG
CGCCGTACTC AATTTTGGCA CCAAATGGTT ACTGCGCCAG GCGAGTCACG TTCAGACTTA
TGGCAGTTAA TGGAATTCTC TAAGCGTTTC ACTACCGACG AAGTTTGGCC AGCCGATGTG
TTAGCTGCTA ATCCTTCATT TAAAGGTAAA ACCTTATATG AAGTACTTTA TCAAAATGGC
AACGTTGAGA AGTTCCCGTT AAGTGATGCC GATCCTAAGT ACTTAAATGA CGAAGCTAAG
CATTTTGGTT TTTACGTTCA AAAAGGTTTA TTCGAAGAGT ACGCTACCTT TGGTCGTGGT
CATGGCCATG ATTTAGCAGA CTTTGATGTA TACCATAAAG AACACGGTTT ACGTTGGCCT
GTTGTTAATG GCAAAGAAAC CAAATGGCGT TTCCGTGAAG GGTCAGATCC ATACGTTAAA
GCCGGTAAAG ACTTTGAGTT CTATGGTAAG CCAGATGGTC GTGCGGTTAT CTTCGCATTG
CCTTACGAGC CAGCAGCTGA ATCACCAGAT GAAGAGTTTG ATATTTGGTT ATCAACAGGT
CGTGTGCTTG AACATTGGCA CTCTGGTTCT ATGACACAGC GTGTACCTGA GCTTTATAAA
GCCTTCCCTG ATGCAGTGTG TTTTATGCAC CCAGAAGATG CTAAAAAGCG CGGTTTACGC
CGTGGTGATG AAATTAGAAT CGTCTCTCGT CGTGGTGAAA TTAAAACCCG AGTTGAAACG
CGTGGACGTA ATAAGCCGCC TGTTGGCTTA GTGTTTGTGC CTTGGTTTGA TGCTAGTCAG
CTCATTAATA AAGTGACGTT AGATGCGACA GATCCTTTGT CAAAACAAAC TGACTATAAA
AAATGTGCTG TAAAGATTGT TAAGGCTTAA
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| Protein sequence | MNRRDFMKAN AAIAAASVAG LALPTSASNL ITSSEQTKLE WNKAPCRFCG TGCSVMVATR
DGKVVATHGD AKSEVNRGLN CIKGYFLSKI MYGRDRLQTP MLRMTDGKYD KHGEFTPITW
EKAFDTMAER WKATIKAKGP TAVGMFGSGQ WTVWEGYAAV KLMKAGFGSN NIDPNARHCM
ASAVGGFMRT FGIDEPMGCY DDMEAADAFV LWGSNMAEMH PILWTRVTDR RLSAPHVKVA
VLSTFEHRSF DLADLPIVFT PQTDLAMLNF IANYIIQNGK VNKDFIKKHV NFRKGTTDIG
YGLRPTHPLE MKAKNVATAG DSTPIDFDEF AKFVADYDVE SVSKLSGVPE HKLIELAELY
ADPDRKVTSF WTMGFNQHTR GVWCNNLIYN IHLLVGKIST PGNSPFSLTG QPSACGTARE
VGTFSHRLPA DMVVTNPEHR KHAEEIWRIP SGIIPPKPGY HAVEQNRRLK DGDLNCYWVQ
VNNNIQAGAN INEEGLPGYR NPENFIVVSD AYPTVTTQAA DLILPTAMWV EKEGAYGNAE
RRTQFWHQMV TAPGESRSDL WQLMEFSKRF TTDEVWPADV LAANPSFKGK TLYEVLYQNG
NVEKFPLSDA DPKYLNDEAK HFGFYVQKGL FEEYATFGRG HGHDLADFDV YHKEHGLRWP
VVNGKETKWR FREGSDPYVK AGKDFEFYGK PDGRAVIFAL PYEPAAESPD EEFDIWLSTG
RVLEHWHSGS MTQRVPELYK AFPDAVCFMH PEDAKKRGLR RGDEIRIVSR RGEIKTRVET
RGRNKPPVGL VFVPWFDASQ LINKVTLDAT DPLSKQTDYK KCAVKIVKA
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