| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_2533 |
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| Symbol | |
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| ID | 4279442 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 3029453 |
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| End bp | 3033265 |
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| Gene Length | 3813 bp |
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| Protein Length | 1270 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 638135328 |
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| Product | exodeoxyribonuclease V, gamma subunit |
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| Protein accession | YP_751214 |
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| Protein GI | 114563701 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1330] Exonuclease V gamma subunit |
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| TIGRFAM ID | [TIGR01450] exodeoxyribonuclease V, gamma subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.568964 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTTACTT TAATTCAATC TAATCAGATG GAAGTGTTAT CTGAACAACT GGCCAAACTG
TTGGCTATTC GTTTAGATAA CGTCAGTTTA TTAGCCAGTG AGCATGTGTT AGTTCAAAGC
CCCGGGATGT CGACTTGGCT GCGTTTAGAA ATCGCTAAAC ACAATGGTAT CGCCGCCGCA
TTATCGTTCC CGTTACCCTC GAGTTTTACT TGGCAGTTAT GCCACGACTT GCTGCCCGAT
GTACCAAAAG ATAACGCCTT TACTAAAGCG GCGATGACCT GGAAGTTAAT GGACTTATTA
CCAAGTCTGC TAGATAACCC AGATTTTAGC CCACTCAAAC AGTACTTATC GCCTCAAGTT
GATACCACAA CTGATATTGC TGCTACAGAT ATTCTTGATA CCGATGTAGA CGCGAATACT
AATACTGATA TTGAAACTGA AACTAATATT CATACAGCAA ACAGCCACGC CATATCGCAG
CTTAATCAGT CACATGATGC GATTAAACTA TTTCAGTTGT GTGGCCGCAT TGCCGACATT
TTTGACCAAT ACTTAGTCTA TCGCCCTGAG TGGATTTTAG CGTGGGAGCA AAACCAGCCG
TTATCAAGCA TCGACAACCG CCTAGCATTA GATGAAAACC AGCAATGGCA ACCGATCCTG
TGGCGAACAT TAATCGACTA TAATCAACAT CATTTGCACG CCAGCCATTA TCATCGCGCC
AATTTACATG CCGATTTAAT TGCAACCTTG GCCAATCCAG ATACCGATTT ATCGATGTTG
CCCGCTCGAT TATACGTGTT TGGTATTTCG TCCATGCCCC CACAAACCCT CGATGTGCTG
TACCATTTAG CCAGTCGTAT CGATTTGATA ATGTTGTCTC TCAGCCCTTG CCAGCATTAT
TGGGGCGATA TTATTGAGCC GAAAACTCGT GCCCGCATGG CACTGCAATA TGCCAACAAA
AAACAACTCG ACCAAGACTG GGAAGACAAG CTAGAAGTAG GTAACCCTAT ATTGGCCAAT
AATGGTCAAA TGGGCCGCGA ACTGCTGGAT TTATTACTGT CTCTGCCGCC AGAACACACC
GATTTTGGTT ACGACTGTTA TGTTGAGCCC GAGCCGAATA ATCTGCTGCA CGGGGTGCAA
TACGATATCT TACAAATGGA AACACTCGGT CAGCCATTAG GGCCAAACTC TAGTGTGTAC
CAAGACATTC ATGCTCGCCG CACCTTATTA CCAAGTGATG ACTCAATTAC CTTACGCAGT
TGCCACAGTG CCCTGCGCGA AGTTGAAACC TTACATGATC ACCTTTTAGA GCTGTTATCA
AACAACAGCG ACTTAAGCCC TAAAGACATC GTGATCATGA TGCCCGATGT CGCAGCGTAT
GCTCCGTATA TTGATGCGGT ATTTGGCACC GCCAACAGTC AATACTTTGC CGACAAAAAT
CCGCAAAAAG GCGATTACTA CATTCCCTAC GCCATTGCCG ACAGGGGCGC AGCGCAAGAG
TCGCCGCTGA TTAATAGTTT TTTAAGCCTG TTAAATATCA ATCAAAGTCG CTTTGGGCTT
ACTGATATTA TCGGTATTTT AGAAGTGCCT GCTATTTTGC GTCGCTTCCA ACTCGATGAT
GACGAATTGT CATTAATCCG CCGCTGGCTA GACGATGCGA ATGTCCGTTG GGGCCGCAGT
GAACAAACTC GCAGCCAACT AGGCGTGCAG CCTTTTACGC AAAATTCATG GGCATTTGGC
ATTAAGCGTT TAATACTGGG CTACGCCTTT AACGACGATG CCGATATTTA TCGCGAAACC
TTGATGGTAC AAGGCATTGA AGGTCAGTCA TCACAAGCAT TAGGTAAGTT GCTCAACTTT
TTAGAAACCA TCGACACCTA TTTCAACTTA TTTGCCAATG ACTACAGCAC CGCAGAGCGC
CTTGAACAAT TACAACAGCT ACTCGCCGAT TGCTACGACA CCACTGATGA CGAGCGTGAA
CAAATTCAAG CCATTCGAGA TGCATTGGTC ACCCTAGACA CTGAGCTTGA AAGTGCCGGT
CATCAAGGCC AAGTTGATAT TGAAGTCCTA AAGCAGTGGT TTAATCAGCG CTTAACTGAA
TCTCGGGTTG GCCAGCGTTA CCTTGCTGGT AGCGTGAATT TTTGTACCTT AATGCCAATG
CGCTCAATCC CCTTTAAAGT GGTGTGCTTG CTGGGAATGA ATGACGGCGT CTATCCGCGG
GTACAACATC CTGTCGGGTT TGATTTAATG GCGCATTTTG GCCCTAAAAA AGGCGACCGC
TCGCGCCGAT TAGACGACCG CTACCTATTT TTAGAAGCAT TACTGTCGGC CAGAGAGCAG
CTTTACATCA GTTATATTGG CCACAGTGAG CGCGATAATG CTGAGCGCAT TGCCTCAATG
CTAGTGTCAG AATTGGTCGA GTATTGCCAA CTCAGCTACC TACCGCAATC CTTACAGCAA
CAGCTTGAAC AACAAGCCGA AATCAACCTT GATGATGCCG ATAAAGCCGT ACTGGCACAG
CTGATTCAAG CACAACCTTT GCAGCCTTTT GACGCTAAAC TTTTCCGAGA AACACCACTA
TCTGCGCATA GTGTGAATAA GCTGCAACAT AGCTTTAATG CCCAATGGTG CCCGCCACCA
GCCAATGCGA CCATTAACAA TCACATTTTT TTTGAGCAAG CATTACCTTT GTCGGCCGAA
CAGGCAGATG AAGTGTTTGC CCATACTCAT ATTAATAGCG AAGGCATTAA AGTGGTCGAA
CTCGAATTGT CGGCATTAAT CCGTTTTTAT CGTAATCCAG CGCAATTCTT TTTCAACCGC
AGTTTAAAAG TCGATTTATC ACTGGATATT CAAGCCGATG ACAATGACGA ACCGTTTAGC
TTAAATGCAC TCGAACGTTA CTTATTGCAA TCACGCATGC TCGACAATGC CATTGAACAT
CAACTCGACA GCCCAGATTT CGAATTACTC AGCAAACTCA AAACCAGCGG TGAATTGCCC
ATGGCGCCGT TCGACGACTT GTTAATTAAT CAATATTTAC GCGATATATC GCCGTTGATT
AATCGGGTGC AGTTTTTACA AGATCAACAA GCCATGCACA CGCTGAATGT GGATCTTAAC
TTTGATCTAC CGATGCAGGA TTTTCCAGCG TATGCTCTAT CTGTGCAGGG TTTACCAGAA
CAAGCAGATA CAACCCATTC GTCCATCGTG CGAGTCAATC TTGTCGGCCG TATTGACGAC
ATTCTGCCTA AAGGCTTAGT CAATTACCGC CCCGGCACTG CCCACGGACG AGATTTTATT
CGGGTGTATT TACGTCATTT ATGCATCAAC GCCATGGCCA ATTCGTCCAC CTCAGGCATG
GGTAAAAATC AATTCAGTTA CTTACTCGAC ATTGGCCATT TTCATGCCTT TGCGCCTATT
ACTGCTGAAC AAGCACAGGC ACAACTCATG CGCTTTATCA GTGGTTTTAT TCAGGGGCAA
ACTCAACCCT TGTGCTTTAT GCCTAAAACG GCTTTCGCCT ATGTTGAAAC CGATGGCGAC
CATGAAGAAA AGCTGCTTAA AGCCCAGCAA AAATGGGATG ATGGCCAAAA CCAGTTCGGC
GAAGGACACG ACCCACATAA CCAGCGTTTA TTCCATTTCC CAGAAGACTT TAGCGAAGCT
AGGTTTGGTG CATTAGCCAT CCATTTGCTG CAACCCATGT TAAGCCAGTA TCACAAAGAT
AAATTGGCAG AATTAGACAC TTTTGTCAGT GGCACCGCGG TCGATATTCA AGCGCAACTC
ATCGCCAACG CAGCTAAACT AGGAGCGCAT TAA
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| Protein sequence | MLTLIQSNQM EVLSEQLAKL LAIRLDNVSL LASEHVLVQS PGMSTWLRLE IAKHNGIAAA
LSFPLPSSFT WQLCHDLLPD VPKDNAFTKA AMTWKLMDLL PSLLDNPDFS PLKQYLSPQV
DTTTDIAATD ILDTDVDANT NTDIETETNI HTANSHAISQ LNQSHDAIKL FQLCGRIADI
FDQYLVYRPE WILAWEQNQP LSSIDNRLAL DENQQWQPIL WRTLIDYNQH HLHASHYHRA
NLHADLIATL ANPDTDLSML PARLYVFGIS SMPPQTLDVL YHLASRIDLI MLSLSPCQHY
WGDIIEPKTR ARMALQYANK KQLDQDWEDK LEVGNPILAN NGQMGRELLD LLLSLPPEHT
DFGYDCYVEP EPNNLLHGVQ YDILQMETLG QPLGPNSSVY QDIHARRTLL PSDDSITLRS
CHSALREVET LHDHLLELLS NNSDLSPKDI VIMMPDVAAY APYIDAVFGT ANSQYFADKN
PQKGDYYIPY AIADRGAAQE SPLINSFLSL LNINQSRFGL TDIIGILEVP AILRRFQLDD
DELSLIRRWL DDANVRWGRS EQTRSQLGVQ PFTQNSWAFG IKRLILGYAF NDDADIYRET
LMVQGIEGQS SQALGKLLNF LETIDTYFNL FANDYSTAER LEQLQQLLAD CYDTTDDERE
QIQAIRDALV TLDTELESAG HQGQVDIEVL KQWFNQRLTE SRVGQRYLAG SVNFCTLMPM
RSIPFKVVCL LGMNDGVYPR VQHPVGFDLM AHFGPKKGDR SRRLDDRYLF LEALLSAREQ
LYISYIGHSE RDNAERIASM LVSELVEYCQ LSYLPQSLQQ QLEQQAEINL DDADKAVLAQ
LIQAQPLQPF DAKLFRETPL SAHSVNKLQH SFNAQWCPPP ANATINNHIF FEQALPLSAE
QADEVFAHTH INSEGIKVVE LELSALIRFY RNPAQFFFNR SLKVDLSLDI QADDNDEPFS
LNALERYLLQ SRMLDNAIEH QLDSPDFELL SKLKTSGELP MAPFDDLLIN QYLRDISPLI
NRVQFLQDQQ AMHTLNVDLN FDLPMQDFPA YALSVQGLPE QADTTHSSIV RVNLVGRIDD
ILPKGLVNYR PGTAHGRDFI RVYLRHLCIN AMANSSTSGM GKNQFSYLLD IGHFHAFAPI
TAEQAQAQLM RFISGFIQGQ TQPLCFMPKT AFAYVETDGD HEEKLLKAQQ KWDDGQNQFG
EGHDPHNQRL FHFPEDFSEA RFGALAIHLL QPMLSQYHKD KLAELDTFVS GTAVDIQAQL
IANAAKLGAH
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