| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_2478 |
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| Symbol | |
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| ID | 4279389 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 2958949 |
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| End bp | 2961636 |
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| Gene Length | 2688 bp |
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| Protein Length | 895 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 638135274 |
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| Product | DNA topoisomerase I |
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| Protein accession | YP_751161 |
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| Protein GI | 114563648 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0550] Topoisomerase IA |
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| TIGRFAM ID | [TIGR01051] DNA topoisomerase I, bacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGAATCAA TTTTCTTTTT TTCGAGACTT TTTGGCGCAA ATAAAACTAT GGGTAAATCG
CTAGTTATTG TCGAATCGCC GGCCAAAGCC AAGACAATTA ATAAATATCT TGGTAAAGAC
TTCATTGTGA AGTCGAGTGT AGGTCATATA CGTGACTTAC CAACTTCGTC TACTTCTGAC
GGTACAACTG TGACTAAAAC CGCAGCAGAA GTTAAGAAAT TATCTCCTGA AGAAAAAGCT
AAATACAAGC TAATCAGAGA CAAACAAGCG CTTGTGGCGC GTATGGGTGT TAACCCAGAT
AAAGGCTGGG CAGCCAAGTA TCAAATCCTG CCTGGTAAAG AAAAAGTTGT TAAAGAATTG
AAAGCGTTAG CAGAAACTGC TGACCAAATA TATCTCGCAA CGGATTTGGA CCGTGAAGGG
GAAGCCATTG CCTGGCATTT ACAGGAAATT ATTGGTGGTG ATCCTTCACG GTATCAGCGA
GTTGTGTTCA ACGAAATTAC TAAAACTGCG ATTCAAGATG CGTTTAGTAA ACCGTCGGTA
CTTGATACCA ATATGGTTAA TGCCCAGCAA GCTCGTCGTT TTTTAGACCG CGTTGTTGGC
TTTATGGTGT CACCATTATT ATGGAAAAAA GTCGCTCGTG GTTTATCTGC TGGGCGTGTT
CAGTCGGTAG CAGTTCGCTT AGTTGTAGAG CGTGAAAGTG AAATTAAAGC GTTTGTTCCA
GAAGAGTTTT GGGATATCCA TGCTGAATTA AATACACCTA CCGCCGCTAG CTTGAAAATG
CAGGTGATGA AATATCAATC TGCTGCATTT GAACCGATTA ATGAAGCACA AGCTAAAGTT
GCTGTCGATG CGTTGCGTGA TGCAACGTAT GTTGTCACTG CGCGTGAAGA TAAAGCAACC
TCAAGCAAAC CTTCGGCACC TTATATTACG TCGACGTTAC AGCAAGCTGC CAGTACTCGT
CTTAGTTTTG GTGTTAAGAA AACCATGATG ATGGCGCAGC GTTTGTATGA AGCTGGTCAC
ATTACGTACA TGCGTACCGA TTCAACCAAT TTGAGTAAAG AAGCGGTTGA AAACTTACGC
GAAATGATTG CTGCCGAGTT CGGTGACAAG TATTTACCGG CAGAACCTAT TCGTTATGGC
AGCAAAGAGG GCGCTCAAGA GGCGCATGAA GCTATTAGAC CGTCAAACGT GGCTGTGCAG
TCCGCTTCGT TAACCGATAT GGAAAGAGAC GCTCAGCGCT TGTATGAGCT TATCTGGCGT
CAATTTGTGT CCTGTCAAAT GACACCTGCT CAATATGATG CAACACGTTT AACGGTAACC
GCGGGTGATT ACGAATTAAA AGCCAGTGGC CGTACCTTAC GTTTTGATGG TTGGACTCGT
GTTCAGCCAC AAGTGAGTAA GAAAAACGAA GAAGATAAGA CACTGCCAGT CGTTGCAAAA
GGCGACAAAT TAGTGCTTGA AACGTTGTCG CCAAAACAAC ACTTTACCAA GCCTGCGCCG
CGTTACAGCG AAGCATCTTT AGTTAAAGAG CTTGAGAAGC GTGGTATTGG TCGTCCTTCA
ACGTATGCGA CGATTATTTC AACCATTCAG GATCGTGGTT ACGTTAAAGT TGATAACCGC
CGTTTCTTTG CTGAAAAAAT GGGTGAGATT GTCAGCGAAC GCTTAGTCGG CAGTTTTAAA
GAATTAATGA GCTACGACTT TACCGCCAGC ATGGAGCAAA CATTAGATGA TGTTGCTCAA
GGTAAGCTGG ACTGGAAAAA AGTATTAGAC GGTTTTTATG GCGACTTTAC CAAGCAGTTA
TTGTTGGCCG AGTTAGATCC TGATGAAGGT GGTATGCGCC CTAATGAGAT GGTATTAACA
GACGACATTA AGTGTCCAAC CTGTTGCCGT CCAATGGGTA TTCGCACTGG TTCAACAGGG
GTTTTCTTAG GTTGTTCTGG TTATGCGTTA CCACCTAAAG AACGTTGTAA GACCACGCTT
AACTTAACCC CAGGTGAAGA AGCTGTAAGC GACAATGAAG ATGGCGAAAC GGAAGCGTTA
CGTGCTAAAC ATCGTTGTGG TAAGTGTGGT ACGGCGATGG ATAGTTATCT CATTGACGAG
ACGCGTAAAT TGCATGTTTG TGGTAATAAC CCGTCATGTG ATGGTTACGA AGTTGAAGCC
GGACAATTTA AGATTAAAGG TTATGAAGGT CCAATTATTG AGTGCGATCG TTGCGGCAAT
AATATGGAAC TTAAAAATGG TAGATTTGGT AAGTATTTTG GTTGCACCAA TAGCGAGTGT
AAAAACACCC GTAAGTTGCT GAGAAGCGGC GAAGCGGCGC CACCAAAAGA AGATCCTATC
TTCTTACCTG AATTGAAATG TACTAAATCG GATGCTCACT TTGTGCTTCG TGATGGTGCT
GCGGGCATAT TTTTAGCTGC CAGTACTTTC CCTAAATCGC GTGAAACACG TGCGCCGTTA
GTGGAAGAGT TAGTTCAGTA TCGTGATTTG TTATGGCCTA AATATGCGTA TCTTGCTGAT
GCGCCAGTCG AAGATGATGA AGGCAATAAA GCCTCGGTTA AATTTAGTCG TAAAACGAAA
GAGCAGTATG TTGCTACTGA AGTTGACGGT AAAGCTACCG GTTGGTCTTC TAAGTTTATC
GGCGGTAAAT GGGTTAGTGA ATCAACTAAG AAAAAAGCGA AGAAATAA
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| Protein sequence | MESIFFFSRL FGANKTMGKS LVIVESPAKA KTINKYLGKD FIVKSSVGHI RDLPTSSTSD
GTTVTKTAAE VKKLSPEEKA KYKLIRDKQA LVARMGVNPD KGWAAKYQIL PGKEKVVKEL
KALAETADQI YLATDLDREG EAIAWHLQEI IGGDPSRYQR VVFNEITKTA IQDAFSKPSV
LDTNMVNAQQ ARRFLDRVVG FMVSPLLWKK VARGLSAGRV QSVAVRLVVE RESEIKAFVP
EEFWDIHAEL NTPTAASLKM QVMKYQSAAF EPINEAQAKV AVDALRDATY VVTAREDKAT
SSKPSAPYIT STLQQAASTR LSFGVKKTMM MAQRLYEAGH ITYMRTDSTN LSKEAVENLR
EMIAAEFGDK YLPAEPIRYG SKEGAQEAHE AIRPSNVAVQ SASLTDMERD AQRLYELIWR
QFVSCQMTPA QYDATRLTVT AGDYELKASG RTLRFDGWTR VQPQVSKKNE EDKTLPVVAK
GDKLVLETLS PKQHFTKPAP RYSEASLVKE LEKRGIGRPS TYATIISTIQ DRGYVKVDNR
RFFAEKMGEI VSERLVGSFK ELMSYDFTAS MEQTLDDVAQ GKLDWKKVLD GFYGDFTKQL
LLAELDPDEG GMRPNEMVLT DDIKCPTCCR PMGIRTGSTG VFLGCSGYAL PPKERCKTTL
NLTPGEEAVS DNEDGETEAL RAKHRCGKCG TAMDSYLIDE TRKLHVCGNN PSCDGYEVEA
GQFKIKGYEG PIIECDRCGN NMELKNGRFG KYFGCTNSEC KNTRKLLRSG EAAPPKEDPI
FLPELKCTKS DAHFVLRDGA AGIFLAASTF PKSRETRAPL VEELVQYRDL LWPKYAYLAD
APVEDDEGNK ASVKFSRKTK EQYVATEVDG KATGWSSKFI GGKWVSESTK KKAKK
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