| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_2466 |
|---|
| Symbol | |
|---|
| ID | 4279377 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | - |
|---|
| Start bp | 2937789 |
|---|
| End bp | 2939009 |
|---|
| Gene Length | 1221 bp |
|---|
| Protein Length | 406 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 638135262 |
|---|
| Product | diguanylate cyclase |
|---|
| Protein accession | YP_751149 |
|---|
| Protein GI | 114563636 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.0503371 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGTTGATTG TAGAAGATAG CATCACTGTA TCGAAAATAT TAAAACACAT GATTGTTCAG
GATCTTGGAT ACCATGTGGA TATAGCACCT GATATGTCGA GTGCATTGAC TTTTTTGGAA
GAAAATCAAT ATTTTGTAGT GGTTGCAGAT TTAAATTTAC CCGATGCTTC TGACGGCGAT
ATCGTCAAGT TAGTGGCATC GTATTCAACT CCTTGCATTG TTCTCACGAG TAATTTAGAT
GCGGCTCAAC GTCGAGAAAT CTTAAAACTC AGCATCGTTG ATTATATTCC AAAGGATAAA
CGCCACAGTT ATCAATATGT GGTCAAGTTA ATTGACAGAC TTTATCGCAA TCAAGACGTT
AAAGTGTTGG TTGCCGATGA TTCGTTGGTG AGTCGTAAGT TTGTAAAAAT GCTCCTTGAA
CAGCATTTGT TCAAGGTTAT AGAAGCCAAT GATGGCGAAG AAGCATTAGC CGTACTACAA
GCGCAGCCTG ATATTCAGTT GCTTATTACT GATTACAACA TGCCAAAAGT TGATGGTGTT
GAACTTGTTT TACGGGTACG TGAGCAGTTT AACCGTGAAG ATATCGCCAT TATTGGTTTG
TCTAATGACA ATGATGAAAG TTTGTCGGCA AAGTTTATTA AAAACGGCGC TAATGATTTT
TTGCAAAAAC CGTTCGTGCA TGAAGAGTTT CATTGTCGAG TGCTTAACAC CCTTGATTCA
CTCGATATGA TGCGTAATTT GTGGCGTAAA GCCAATCGTG ATTATTTAAC TAAAGCCTAC
ACTCGGCGTT ATTTTTTTGG TCAATACCAA CAAAATGATT CGGAACAGAA ACTGCTATCA
GTGGCACTAT TAGATATAGA TTTCTTCAAA AAAATCAATG ATACCTATGG CCATGATGTC
GGCGATGAAG TGTTAATTGA ATTTGTGCAA CGCTTAGAAA ACGCCTTTGC AGCGAATTTT
ACTGTAGCGC GTTTTGGCGG AGAAGAATTT GTTGTTGCTT TTAAAGGTTT AGATGCCATT
AAAGCTAGCC TACTAGTGAA TAAATTTCGG GAACAATGTG AAAGCAACCC GATAATGACC
TCGGCAGGGG ATTTGTCTGT TTCATTCAGT TGCGGCGTGT CTACCGTGAA TAATGAAACA
TTAGACCATG CATTGCAACG TGCCGATGAG TTGCTGTATA AAGCTAAAAA TGCAGGTCGT
AATAGGGTTG TTTCTCAGTA A
|
|---|
| Protein sequence | MLIVEDSITV SKILKHMIVQ DLGYHVDIAP DMSSALTFLE ENQYFVVVAD LNLPDASDGD
IVKLVASYST PCIVLTSNLD AAQRREILKL SIVDYIPKDK RHSYQYVVKL IDRLYRNQDV
KVLVADDSLV SRKFVKMLLE QHLFKVIEAN DGEEALAVLQ AQPDIQLLIT DYNMPKVDGV
ELVLRVREQF NREDIAIIGL SNDNDESLSA KFIKNGANDF LQKPFVHEEF HCRVLNTLDS
LDMMRNLWRK ANRDYLTKAY TRRYFFGQYQ QNDSEQKLLS VALLDIDFFK KINDTYGHDV
GDEVLIEFVQ RLENAFAANF TVARFGGEEF VVAFKGLDAI KASLLVNKFR EQCESNPIMT
SAGDLSVSFS CGVSTVNNET LDHALQRADE LLYKAKNAGR NRVVSQ
|
|---|
| |