| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_2402 |
|---|
| Symbol | |
|---|
| ID | 4279313 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | + |
|---|
| Start bp | 2866337 |
|---|
| End bp | 2867713 |
|---|
| Gene Length | 1377 bp |
|---|
| Protein Length | 458 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 638135198 |
|---|
| Product | L-serine dehydratase 1 |
|---|
| Protein accession | YP_751085 |
|---|
| Protein GI | 114563572 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1760] L-serine deaminase |
|---|
| TIGRFAM ID | [TIGR00720] L-serine dehydratase, iron-sulfur-dependent, single chain form |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.000825911 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATTAGTG TATTTGACAT GTTCAAAATT GGTATCGGTC CATCTAGCTC ACATACAGTG
GGTCCTATGA AGGCAGGTAA AACTTTTATA CAGCATGTCG CTGATAATAA TTTATTAGCG
GATACCGACG AGTTACAAAC AGAATTATTT GGATCTTTAG GTCAAACAGG CAAAGGCCAT
GGTACCGGTA AAGCGGTCAT TTTAGGGCTA ATGGGTGAAG ACCCAGAAAC CGTAGATACC
GATGGGATTG ATGCCATTTT AGACGCAGTG TCTACGACTC AAAAACTCAC CTTAGCAGAC
GGACGTCAGG TTAAATTTAC TCGCGAGACT GGGGTAACTT ACCATAGACG CAAAACCTTG
CCGGCACATG CTAATGCCAT GACCTTATAC GCATTATCTA AAGGCGAATG CATATACCAG
CGTACCTATT ATTCGGTTGG TGGTGGGTTT ATTCTTGATG AAGATGAAAT AACTCAACGT
AATGCTTCTC CAGCAACGCC AATTGAACAA GCACCTTATG ACTTCAACAG TGCACTGCAA
TTACTGCAAT TGTGCTGCGA CAACGGCTTA AGCATTTCAT CATTAATGAT GGCTAATGAG
CTTAGCATTG CCAGTGAAGA TGAGATCAAA CAAGGTTTGT GGAAAATTTG GCAAACCATG
AAAAACTGCG TTGAACGCGG TTATCAAAAG GAAGGCATAT TGCCAGGCGG TTTAAAATTA
CGCCGACGTG CCCCAGCGCT CTACCGCCGC TTAAAAGCGG AAGGGAGAAA TAACACAGAC
CCATTGACCG CTATGGACTG GGTTGATTTA TTTGCTTTAT CGGTTAATGA ACAAAATGCA
GCAGGCGATC GCGTTGTAAC TGCCCCAACA AACGGCGCCG CAGGGATTAT CCCGGCAGTA
TTGTGTTACT ACGATATGTT TGTGCAAGAA GTCGATATCG ATGTGTGCAG CCGCTATCTG
TTAACCGCTG CTGCCATTGG TATTTTGTAC AAGAAAAATG CCTCGATTTC TGGCGCTGAA
GTGGGTTGCC AAGGCGAAGT GGGCGTAGCC TGTTCAATGG CAGCCGGTGC GTTAACTGAA
ATTATGGGCG GAACCGTAGA ACAGGTTGAG AATGCCGCTG AAATTGGCAT GGAACATAAC
TTAGGTTTAA CCTGCGATCC AGTTGGCGGC CTAGTACAAG TGCCTTGTAT TGAACGTAAT
GCTATGGGTG CAGTAAAAGC GATTAATGCT TCACGCATGG CACTTCGCGG TGATGGTAAT
CACAAAGTGT CTTTGGATAA AGTCATTAAA ACGATGATGG AAACCGGTAG AGACATGCGC
AGTAAATACA AAGAAACCGC AAAAGGTGGT CTTGCGGTGA ATATCGTCGA ATGTTAA
|
|---|
| Protein sequence | MISVFDMFKI GIGPSSSHTV GPMKAGKTFI QHVADNNLLA DTDELQTELF GSLGQTGKGH
GTGKAVILGL MGEDPETVDT DGIDAILDAV STTQKLTLAD GRQVKFTRET GVTYHRRKTL
PAHANAMTLY ALSKGECIYQ RTYYSVGGGF ILDEDEITQR NASPATPIEQ APYDFNSALQ
LLQLCCDNGL SISSLMMANE LSIASEDEIK QGLWKIWQTM KNCVERGYQK EGILPGGLKL
RRRAPALYRR LKAEGRNNTD PLTAMDWVDL FALSVNEQNA AGDRVVTAPT NGAAGIIPAV
LCYYDMFVQE VDIDVCSRYL LTAAAIGILY KKNASISGAE VGCQGEVGVA CSMAAGALTE
IMGGTVEQVE NAAEIGMEHN LGLTCDPVGG LVQVPCIERN AMGAVKAINA SRMALRGDGN
HKVSLDKVIK TMMETGRDMR SKYKETAKGG LAVNIVEC
|
|---|
| |