| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_2368 |
|---|
| Symbol | |
|---|
| ID | 4279279 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | - |
|---|
| Start bp | 2820658 |
|---|
| End bp | 2822151 |
|---|
| Gene Length | 1494 bp |
|---|
| Protein Length | 497 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 638135164 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_751051 |
|---|
| Protein GI | 114563538 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3517] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | [TIGR03355] type VI secretion protein, EvpB/VC_A0108 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCATGG AAGCTGCGTC ATTAGATGCT GTATCTGAAG AACAAGCACA AAGTGTTTCT
ATTTTAGAGC AGGCCATTTT TGCAACCAAG CAAACCGATT CTTCGCGTGC TGAAGAGCTT
ATTCGTTCAT TAACGGAAGA GGCCTTGAAA GGCACTGTGC AATGGGATAA AAACCTCACA
GTTACTTTTA ACAAGGCAAT TACTCGTTTG GACGATATTA TTTCTAAGCA ATTAGCTGCC
ATCATGCACA ATGAAGAACT GCAAAAACTG GAAGGCAGTT GGCGTGGATT GCATCATACA
GTGAAAAACT CTGAAACAAA TGAAACGCTT AAAATTCGTG TCATGAGTTT GTCCAAAAAA
GAACTTCACA AAGATTTGAG TAAAGCGGTT GAGTTTGATC AGAGTCAAAT GTTCAAAAAA
ATCTATGAGG CTGAATTTGG CACCCCGGGC GGAGAACCTT ATGGTTGCTT AGTCGGTGAT
TATGAGTTTA GTAATCATCC TGAAGATGTT GAAACATTAT CATTGATATC TAATGTTGCA
GCCGCTGGCT TCTGCCCATT TGTTTCTGCT GCTGGTTCTT CTTTATTCGG TTTTGATGAG
TGGACAGAAC TCAGTAAACC ACGCGATCTT GAAAAAGTAT TTGAATCTTT AGAATACACG
CAATGGCGCT CTTTCCGTGA CAGTGATGAC TCTCGTTTTG TCACCTTAAC CATGCCACGT
GTGCTTGCCC GTCTTCCGTA TGGTGAAGCA ACAAAACCTG TTGAAGAGTT TTGCTATGAA
GAATTCGAAT TAGATTTAGA AAGTGGTCGT GCTAAAGTCG CTGATCACGA TGACTATTGC
TGGATGAATG CCGCGTATGT CATGGCAACT AATATGGGGC AGGCATTTAG TAAATATGGT
TTCTGTACCG CAATCCGTGG CGCCGAAGGT GGTGGTAAGG TTGAAGGATT ACCAGCTCAT
GTATTTACCA GTGATGATGG TGATCCGGAT TTAAAATGCC CAACAGAAAT TGGCATTACC
GATCGCCGCG AAGCTGAATT AAGTAAGTTG GGTTTCTTGC CTCTATGTCA TTACAAGCAT
ACTGATTATG CCGTGTTCTT TGGCTCTCAA TCTTGCCAAA AACCTAAAAT AATGTCTAAC
CATGATGCTA CCGCGAATGC GGCCATTTCT GCACGTTTAC CTTACCTAAT GGCAACATCA
CGTTTTGCGC ATTATCTTAA AGTGATGGCT CGAGACAAAA TTGGTAGTTT CATGGAAGCT
GAAGACGTCG AGTCTTGGTT AAATCGCTGG ATTTTATCAT TTGTTAATGC TTCAGAAGGT
GGTGGGCAAG AGATTCGTGC CAAGTACCCA TTAGCAGATG CAAAAGTTGA AGTTAAAGAG
ATCCCTGGTC AACCTGGTTC ATACAATGCT GTTGCATGGT TACGTCCTTG GTTACAAATG
GAAGAACTGA CAGCCTCTTT ACGTTTAGTC GCGAAGATCC CTAAAGTAGG ATAA
|
|---|
| Protein sequence | MSMEAASLDA VSEEQAQSVS ILEQAIFATK QTDSSRAEEL IRSLTEEALK GTVQWDKNLT
VTFNKAITRL DDIISKQLAA IMHNEELQKL EGSWRGLHHT VKNSETNETL KIRVMSLSKK
ELHKDLSKAV EFDQSQMFKK IYEAEFGTPG GEPYGCLVGD YEFSNHPEDV ETLSLISNVA
AAGFCPFVSA AGSSLFGFDE WTELSKPRDL EKVFESLEYT QWRSFRDSDD SRFVTLTMPR
VLARLPYGEA TKPVEEFCYE EFELDLESGR AKVADHDDYC WMNAAYVMAT NMGQAFSKYG
FCTAIRGAEG GGKVEGLPAH VFTSDDGDPD LKCPTEIGIT DRREAELSKL GFLPLCHYKH
TDYAVFFGSQ SCQKPKIMSN HDATANAAIS ARLPYLMATS RFAHYLKVMA RDKIGSFMEA
EDVESWLNRW ILSFVNASEG GGQEIRAKYP LADAKVEVKE IPGQPGSYNA VAWLRPWLQM
EELTASLRLV AKIPKVG
|
|---|
| |