| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_2362 |
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| Symbol | |
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| ID | 4279273 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 2812315 |
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| End bp | 2814921 |
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| Gene Length | 2607 bp |
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| Protein Length | 868 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 638135158 |
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| Product | ATPase |
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| Protein accession | YP_751045 |
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| Protein GI | 114563532 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0542] ATPases with chaperone activity, ATP-binding subunit |
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| TIGRFAM ID | [TIGR03345] type VI secretion ATPase, ClpV1 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.488644 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCAGCGA TGACTTTAAG TAAATTGGTA GGAAAACTTA ATCCAGTATG TCGACAATCT
TTAGAAACCG CTGCCAGCGT ATGCCATAGC CGCAGCCAAT TCAGCGTTGA GATTGAGCAT
TGGTTATTAG CGTTGCTAGA GAATGGTTCG GGTGATTTAG ACATCATCAT GGCCAGTTTT
TCAGTACAAA AAGATCAGTT GATTAGTGAT ATCCGTCAGG GATTAGAAAA GTTTAAAACA
GGCAACAGTG CAGCACCAAG CTTGTCACCA CATATAGTAA GTTTGCTTCG TCAAACTTGG
TTAAATACCA GTATTGAATT CAACGATAGT GAGATAAGAA CTGCCTATCT GATTTTTACC
TTGCTGACTG ACGATTCATT AAACTCTTTG GTTTCGTGCT CTGCAAAACA GCTCCTTAAA
ATAGATCCTG CACAGCTAAA ACATGCATGG CCACAGCTTG CTCGTCAATC TACCGAGCAT
AAAGTGTCAA GTAGCGATAT CGAAGAAACT CAGGCGATGC AGTCTGCGCC GAGCAAAACA
CCAAATCTAG ACCAATTTAC CCAAAATTTA ACCGAGCAAG CAGAACTGGG GAAAATAGAT
CCTATTCTTG GACGTGATAA TGAAATTAGG CAGATGATCG ACATTTTAAC CCGTCGCCGT
CAAAATAATC CTATTTTAAC GGGTGAAGCC GGTGTTGGTA AAACCGCTGT TGTGGAAGGT
TTAGCGCTTA AAATTGCCCA GAAAGAAGTT CCGACTGCAT TACAAAATGT TCGTATTCAT
GTACTGGATT TAGCCTTACT ACAAGCTGGA GCCGGAGTGA AAGGGGAATT TGAGAACCGC
TTAAAAGCTT TAATTAAAGA AGTTAAACAG TCTGTTAAAC CTATTATTTT ATTTATAGAT
GAAGCTCACA CCATGATTGG CAGCGGCGGA CAAGCTGGAC AAAATGACGC GGCAAATTTA
TTAAAACCCG CATTAGCGCG TGGTGAGTTA CGTACCATTG CGGCAACAAC ATGGGCAGAA
TATAAAAAGT TTTTTGAAAA AGATGCCGCA TTAACTCGTC GTTTTCAAGT GGTTAAAATT
GAAGAGCCTT CTCCTGAACA AGCTATTGCA ATGATGCGGG GCTTGTTACC TGTAATGGAA
GGGCACCATA AAATTCTTGT TTCCGATCAA GCTTTATGTG CTGCAGTTAA CTTATCTCAT
CGATATATTA CTGGCCGACA ACTGCCAGAT AAAGCGGTAA GTTTATTAGA TACTGCATGC
GCTCGTGTTG CTATGAGTCA AGCTTCTACT CCTGGAATGG TTGAATCATT ACAACGACAA
ATTCAGCAAC TAGACACACA AATTAGCATT CTAACTCGTG AGCAAAAAAC AGGTTCAGAT
CATAAAAAGT CTATTACAGA GTTAACCAAA AAACATAAAT TGCTTTCAAA AGAACTCGCT
CCTTTGACAA CACAATGGCA GGACGAATTA GTTACCGTTC AAAAAATTGC AGAATTAGTT
GGCCAGATTC AAGCATCAGA AACAGATACC GCACCTTTGT TAGTGGAGTT AACGGCGTTT
AAGGCAATAT TGTCAGCCAA TAAACAGCCT ATGGTGCATT GGCAAGTTGA TGAACAATTG
GTTGCTGAAG TCATTTCTGA TTGGACTGGC ATTCCTGCAG GTAAAATGCA GGATGATGAA
ATAAAAACAA TTTTGAACTT AAAAGACACC ATGGCCAAGC GCGTTATCGG CCAAGATCAT
GCCTTAGATT TAATCGCCAA AACAGTGCAA ACGTCTCGTG CACAGTTGGG TGATGAAAAA
CGTCCCATTG GTGTATTTTT ACTGACAGGC CCTAGCGGCG TAGGTAAAAC AGAAACGGCA
TTAACATTGG CTGAGCAAGT TTATGGTAGC GAAGATAATG TAACTGTCAT CAACATGTCT
GAATTTAAAG AAGAACATAA AGTGTCATTA CTTTTAGGTT CACCTCCAGG TTATGTTGGT
TATGGTGAAG GTGGAGTGCT GACTGAAGCC GTTCGCCGTA AACCTTATAG TGTTATTTTG
CTGGATGAAA TGGAAAAGGC ACATCCAGGT GTTCAAGATA TTTTTTATCA AGTTTTTGAT
AAAGGCACCA TTAAAGATGG TGAGGGGCGT GATATAGATT TCAAAAATAC TATTATCATT
ATGACCTCAA ATGCTGGTAC AGAAACCACG ATGGGCTTAT TTGAAGATGA AAAAATTGCG
CCATCAATTA AAGGTTTACG CAAAGCACTT CAAGATGATT TATTGAGTTA TTTCAAACCG
GCTTTTTTAG GCCGTTTAAA TGTAATCCCT TATATTCCGT TGACCCAACT AATGCTCAAT
GAAATCACTA AATTGCAATT ACAGCGAGTT GCTAATCGTT TAGCTGAGCA TTATCAAGCT
AAGTTCACTT ACAGTGATGA TGTGGTGAGC CAAATTGTGT CTATGTGTCA GGATGCTGGT
TCAGGTGCTC GCAATGTGCA TAATATTTTA CAAAATACTA TGTTGCCTGA CCTTTCGATC
AAAATCTTAC ACAATATGGC TAACAATAAG AAAACAACCA ATGTAAAAGT AAATGTAGTA
AACGATGAGT TTATTTATAA AATCTAA
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| Protein sequence | MSAMTLSKLV GKLNPVCRQS LETAASVCHS RSQFSVEIEH WLLALLENGS GDLDIIMASF
SVQKDQLISD IRQGLEKFKT GNSAAPSLSP HIVSLLRQTW LNTSIEFNDS EIRTAYLIFT
LLTDDSLNSL VSCSAKQLLK IDPAQLKHAW PQLARQSTEH KVSSSDIEET QAMQSAPSKT
PNLDQFTQNL TEQAELGKID PILGRDNEIR QMIDILTRRR QNNPILTGEA GVGKTAVVEG
LALKIAQKEV PTALQNVRIH VLDLALLQAG AGVKGEFENR LKALIKEVKQ SVKPIILFID
EAHTMIGSGG QAGQNDAANL LKPALARGEL RTIAATTWAE YKKFFEKDAA LTRRFQVVKI
EEPSPEQAIA MMRGLLPVME GHHKILVSDQ ALCAAVNLSH RYITGRQLPD KAVSLLDTAC
ARVAMSQAST PGMVESLQRQ IQQLDTQISI LTREQKTGSD HKKSITELTK KHKLLSKELA
PLTTQWQDEL VTVQKIAELV GQIQASETDT APLLVELTAF KAILSANKQP MVHWQVDEQL
VAEVISDWTG IPAGKMQDDE IKTILNLKDT MAKRVIGQDH ALDLIAKTVQ TSRAQLGDEK
RPIGVFLLTG PSGVGKTETA LTLAEQVYGS EDNVTVINMS EFKEEHKVSL LLGSPPGYVG
YGEGGVLTEA VRRKPYSVIL LDEMEKAHPG VQDIFYQVFD KGTIKDGEGR DIDFKNTIII
MTSNAGTETT MGLFEDEKIA PSIKGLRKAL QDDLLSYFKP AFLGRLNVIP YIPLTQLMLN
EITKLQLQRV ANRLAEHYQA KFTYSDDVVS QIVSMCQDAG SGARNVHNIL QNTMLPDLSI
KILHNMANNK KTTNVKVNVV NDEFIYKI
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