Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_2360 |
Symbol | |
ID | 4279271 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | - |
Start bp | 2809539 |
End bp | 2811395 |
Gene Length | 1857 bp |
Protein Length | 618 aa |
Translation table | 11 |
GC content | 40% |
IMG OID | 638135156 |
Product | Rhs element Vgr protein |
Protein accession | YP_751043 |
Protein GI | 114563530 |
COG category | [S] Function unknown |
COG ID | [COG3501] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | [TIGR01646] Rhs element Vgr protein [TIGR03361] type VI secretion system Vgr family protein |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCTTAAGG CCACTCAAAA AAATAATATC ATCAGTATCA CAACGCCATT AGGTAAGGAT ACTCTGTACC TAACGCATTT TACTGCCACA GAAGCCATCT CTCAGCTTTT TTCAATCAGC GTCTCCATGT TCACGGTTGG CACCCAGATT AGTCTCGACA GTTTAGTGGG TAAAAATGTT TGTATTACTT TACGTAATGC CGAAAGTAAT GGTGCAGTTC GATACTTTCA TGGGGTGGTA AGTCATCTTG AGTCTGCTGG AATGCGGACC GCAGCGTCAG ACGATGCACA GAATTATATA GATTATCAAG CCGTTATAGT GCCTCAGATG GCATTGATGA AAAAACGCAG TAATTGTCGA ATTTTTCAAA ATAAGTCAGT CATTGATATT GTTAAAGACT TGTTTGGTCA ACATAAAGTT GAATTTCAAA ATAAAACCAC CAACACCTAC CCTAAATATG AATACTGTGT GCAGTATTTA GAATCAGATG TCGATTTTGT TTGTCGTTTA TTACAGCAAG AGGGAATTTT CTTCTTCTTC GAGCATAGTG TTAGTGCTCA TACCCTAGTA CTTGCTGATG ATATAAACGC CTACAAACCT TGTGCAGAAG AGAAGGTTCG TTGTTTCTCA GGTCATTTAG CCGAGTCGCA CGTGTCTCAT TGGCAAGGCG GCATGAGCAT GGTGAGTGGC GGTTTTATTC AAAAAGGTTA TGACTACGAA CAACCTAAAT TATACCCATC AGGTAATCAT ACTAACGCAA ATCTTCCTGA ACAAAGTGCA CTTGAGGTGT ACGATTATTT GGGCGAGTCT GAGTTCAACA AGCGTGCTCA ACCGTTTGCC AATAATCAAC TTGAAGCCCT GCAAAAAGAC ATGAATAAAT GCAGCGGCCA AGGCGATTGT CGTAGTTTTA TGGTGGGTAA GTTTTTTACT TTCAAAGATC ATGAAAACGC GAGTTATAAA GGTAAGAGCT TTGTTATAAG CTCACTGAGA ACGTCGGCTA CTCAGCCTAA TCAGTCAGGC ACAAGCCAAT CAATGTCTGG CAGTGTTTAT CAAAACGATT TTGAATGTGT TCCTAAAAGT ACTCCTTATC GCTCACAGCT TCATTTACGT AAACCATTAA TTAATGGGGT ACAAACAGCG GTAGTGACTG GTGAACCTGG TGATGAACAA CATATTGATA AATTTGGCCG TGTAAAAGTA CAGTTTCATT GGGATCGTGA AGGCGAGTTC AATAGTAAAA GTTCATGTTG GATCCGTGTC GCACAAAGCT GGGCTGGCAA CAAGTGGGGT GCATTCTTCT TCCCTCGCGT AGGCCAGGAG GTGTTAGTTG AGTTTATCAA TGGTGACCCT GATCAACCGA TTATCAGCGG TGCGGTGTAT AACGCAGACT TAATGCCTCC TTATGCATTA CCGGCTAAAA AGACTCAGTC TGGCATTAAA ACCCATAGTA CTAAGGACGG TGGTGCCGAC AATTTCAATG AGTTACGTTT TGATGATGAA AAAGGCAAAG AGTTATTATT CCTCCAAGCA GAAAAAGATC ATCTATTGAA TGTAAAACAT GATCAAAAAG ACACCATAGG CAACGACCGT TTCACTGACA TCGTTAATAA CGATAACGTT AAAATTGGTA ATAATCGACT AGAAGACATA GCCAATAATG ACAGTTTAAA AGTCGGTAAA GTACTTAATA TTGAAGCGGG TAATGAAATT GTCATTAAAA CCGGCAGCGC ATCAATCAAA ATGAGCAGCG ACGGTTCGAT TTCTATCGAA GGCACCAACA TTACTATTAA AGGGACAAAC GTTAAGGTTA ATGGTACCAG TATTGCCTTA AAAGCTGCTC AAATTAAGTT GAACTAG
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Protein sequence | MLKATQKNNI ISITTPLGKD TLYLTHFTAT EAISQLFSIS VSMFTVGTQI SLDSLVGKNV CITLRNAESN GAVRYFHGVV SHLESAGMRT AASDDAQNYI DYQAVIVPQM ALMKKRSNCR IFQNKSVIDI VKDLFGQHKV EFQNKTTNTY PKYEYCVQYL ESDVDFVCRL LQQEGIFFFF EHSVSAHTLV LADDINAYKP CAEEKVRCFS GHLAESHVSH WQGGMSMVSG GFIQKGYDYE QPKLYPSGNH TNANLPEQSA LEVYDYLGES EFNKRAQPFA NNQLEALQKD MNKCSGQGDC RSFMVGKFFT FKDHENASYK GKSFVISSLR TSATQPNQSG TSQSMSGSVY QNDFECVPKS TPYRSQLHLR KPLINGVQTA VVTGEPGDEQ HIDKFGRVKV QFHWDREGEF NSKSSCWIRV AQSWAGNKWG AFFFPRVGQE VLVEFINGDP DQPIISGAVY NADLMPPYAL PAKKTQSGIK THSTKDGGAD NFNELRFDDE KGKELLFLQA EKDHLLNVKH DQKDTIGNDR FTDIVNNDNV KIGNNRLEDI ANNDSLKVGK VLNIEAGNEI VIKTGSASIK MSSDGSISIE GTNITIKGTN VKVNGTSIAL KAAQIKLN
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