Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_2318 |
Symbol | |
ID | 4279230 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | + |
Start bp | 2761726 |
End bp | 2762388 |
Gene Length | 663 bp |
Protein Length | 220 aa |
Translation table | 11 |
GC content | 39% |
IMG OID | 638135115 |
Product | ECF subfamily RNA polymerase sigma-24 factor |
Protein accession | YP_751002 |
Protein GI | 114563489 |
COG category | [K] Transcription |
COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGAAAATG TTCAATCACA AAGCACACAA AGTCGTTATG ATAAGGGGCA TCTTGCAAAA AGATCCCTAA TTAAACTAAG CGGTGCTATG AAATCAAACG AACCCAATCC AATGGCTGAT GAGCTGGCGT CATTAATGAC GCAGGTGGCT AATGATCGAT GCAAAACATC TTTTGCAAAA CTTTTTTCGC ATTTTGGCCC AAAAATTAAC TCTTTTGGTG TCCAGCGCTT AAGCCAACAG GGCTTAGCCA TGGATTTAGT GCAAGAGACA ATGACTAGAG TATGGACAAA AGCCCATCTA TATAACGCAG AGAAAGCAGC GGTAAGCACT TGGGTATTTA CCATCATGCG TAATCAATGT TTTGACATGC TTCGTAAAGT ACAACACAAC CGTGAAGATT CTTTCGGTGA TGATATTTGG CCTTTATTTG AGTCTGACGA AGCTGAAAGC AACGACAATG ATTTTTTATT ATCGGCCAGT TTATTGCAGC ATGTAGAAGA ATTACCCCCT CTTCAGCGCC AGGTAGTACA AGGTATTTAT ATGCAAGAGC TTACTCAACA AGAGTTAGCG GAAAAACTTA ATATTCCAAT TGGAACGGTT AAATCACGAC TTAGACTCGG GTTAGAAAAA TTAAAAAGCT TTATGGAGAA ACACTATGAT TAA
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Protein sequence | MENVQSQSTQ SRYDKGHLAK RSLIKLSGAM KSNEPNPMAD ELASLMTQVA NDRCKTSFAK LFSHFGPKIN SFGVQRLSQQ GLAMDLVQET MTRVWTKAHL YNAEKAAVST WVFTIMRNQC FDMLRKVQHN REDSFGDDIW PLFESDEAES NDNDFLLSAS LLQHVEELPP LQRQVVQGIY MQELTQQELA EKLNIPIGTV KSRLRLGLEK LKSFMEKHYD
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