| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_2171 |
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| Symbol | |
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| ID | 4279083 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 2596956 |
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| End bp | 2598854 |
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| Gene Length | 1899 bp |
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| Protein Length | 632 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 638134966 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_750855 |
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| Protein GI | 114563342 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2200] FOG: EAL domain
[COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.00000155509 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGGCTTAT CGAAATCCTT TCAGCTTGTC CTTTTTATCG TTTTCGGTTT ATTAATTTAC
CGAATTTACA CGGTGGAAAA CAACGAAGTA CAAGAACAAG GTGAAATAGC ACGTGCTAAT
TACCAGCAAT ATGTGCAAAC CATAGATCAA TGGCATGGTA GTGGAGAAGC GCTATACCAA
CGTATGTCTA AAGTGTTTTC TTTTCAATTT TTCCAATATA TCCATAATAC TGACAGCAAT
GAAAATTTTA CTCATGGCAG CTTACTTCGT CCTGCTGACG ATTTTGCCAG CGAGATTTTT
AATGTTGAAT TAGGTCATGT GCAAGATTTT CCTGACGGGC GCTTACAAGT TAGATTAGAC
ACTGCGAGTG TGTTGTCACC TAGTTTTAAT GACTTAGAAC AAACGGCAAC ATTATTGATT
ACCGCTTATA TCGCTTTGAT GTTGTTATTT GCAGTGTTAA TGCAATTACA TCGTAAAAGA
ATTAACTATG CCGCCGAATA CATTACTCAT ATTCCAGACT TATCATTCCT AGCCATTGAA
AAATCTCGCT TCCCAGGGGT GCTACACCCC ATCGGCAAAG CATTAGAAAT ATGTCGTAGT
CAATTAAAAC TCAGTCTAGA TCGCGTACGC AAAGAAAATG AACAATTAAC TAAAGCGGCT
TATCAAGATC CCGTGAGTGG CTTTTCTACT CGACAACGCT TTACACAACA TATTGAAGCC
ATTAGCAAAA AAGATAAGCA ACAGTATGGT GTTCTGGTTG TTATTAAGGC CGCAGAACTG
GCAACGATTA ACGAACTTCA TGGCCGTGCT GCTGGTGATG ATTATTTAGC TAAACTGGCT
ACTTGTATTC GAAAATCAGT TACAAACCTC GGATTGAGTG AATGTTTTCG GGTATCTAGC
GGTGATTTTG CTGTTTTCAT TGAAAGTATT ACTCTTAAAG AGGGTGAACG ATTTTTAGAG
CAACTTAAGC GCCATCTTGA TGAATATGCT CAAAGCACAA AAAGTGACTC TGTTGCACAT
GCCGGTATGG TTCCGTACGA ACAAGGAATT GAACCAGTAG CATTGATGAC TTTAGCTGAT
ACAGCCGTCA GCGTGGCACA AACACTAGGA CCCAATCGCT ACTATCAATT GGAAAAATTA
TCCGCTAATG AGCAATTCGG TAATGACCAT TGGAAAGTCA CCATTGACGA CTTGATTAAC
CGTCGAAGTA TCAAATTCTA TCAACAACCT ATTCAGCCCT GTAATAATGA CACCGAAGTT
TACCGTGAGC TTTTGGCTCG GTTTTATAAC TCCGAAGGTG AACATTTACC CACAACCACA
GTGATTGCAA TGGCTGAGCG TTATGGAATG AGTGTAGAAC TCGATAAAAT GATAGTCACT
CAAACCATTA AAGTGTTAAG TGAAAATCCG AGTATTTCAG GAAAAATGGG GGTGAATATT
AGTGCATCCT CAGCACTACA AGACAGTTTT ACCGTGTGGT TGAAAGATAT ATTATCTAAA
CACCGTGGTA CTGCTGCCCG CTTAGTGTTT GAACTCAATG AGTCTGGAAT GCAGGCTAAC
TTAGAGTCTA GCCATAAATT TGTTACTGAG ATCCATAAAG TTGGCGCTAA AGTCGCTGTC
GAACGCTTTG GTTTAGGTTT TACCTCATTT AAATTTTTCC GCGAGGTCCG TCCTGACTTT
ATCAAATTGG ACAGCAGTTA TAGTGATAAT ATTGAACAGG ATAACAACAA TAAATTCTTT
ATACGGATGA TTGTTGATAT CGCTAAACGC ATCAGTATTC GTGTCATTGC CACCGGAGTT
GAAAAACAAG ATGAAAAGCT TGTCCTAGAA AAACTCTTAG TGGATGGTCT ACAAGGATAT
TATATTGCTA AACCTGAAGC ATTGTTAATT AAACAGTAA
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| Protein sequence | MGLSKSFQLV LFIVFGLLIY RIYTVENNEV QEQGEIARAN YQQYVQTIDQ WHGSGEALYQ
RMSKVFSFQF FQYIHNTDSN ENFTHGSLLR PADDFASEIF NVELGHVQDF PDGRLQVRLD
TASVLSPSFN DLEQTATLLI TAYIALMLLF AVLMQLHRKR INYAAEYITH IPDLSFLAIE
KSRFPGVLHP IGKALEICRS QLKLSLDRVR KENEQLTKAA YQDPVSGFST RQRFTQHIEA
ISKKDKQQYG VLVVIKAAEL ATINELHGRA AGDDYLAKLA TCIRKSVTNL GLSECFRVSS
GDFAVFIESI TLKEGERFLE QLKRHLDEYA QSTKSDSVAH AGMVPYEQGI EPVALMTLAD
TAVSVAQTLG PNRYYQLEKL SANEQFGNDH WKVTIDDLIN RRSIKFYQQP IQPCNNDTEV
YRELLARFYN SEGEHLPTTT VIAMAERYGM SVELDKMIVT QTIKVLSENP SISGKMGVNI
SASSALQDSF TVWLKDILSK HRGTAARLVF ELNESGMQAN LESSHKFVTE IHKVGAKVAV
ERFGLGFTSF KFFREVRPDF IKLDSSYSDN IEQDNNNKFF IRMIVDIAKR ISIRVIATGV
EKQDEKLVLE KLLVDGLQGY YIAKPEALLI KQ
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