| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_2153 |
|---|
| Symbol | |
|---|
| ID | 4279065 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | - |
|---|
| Start bp | 2561783 |
|---|
| End bp | 2563102 |
|---|
| Gene Length | 1320 bp |
|---|
| Protein Length | 439 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 638134942 |
|---|
| Product | DEAD/DEAH box helicase domain-containing protein |
|---|
| Protein accession | YP_750837 |
|---|
| Protein GI | 114563324 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
|---|
| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.0826184 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCTTTTT CGACACTTGG ATTACGCGAC ACGATTGTCA ATGCCCTACA TGAAGTGGGA
TACAGTCAGC CGACACCTAT TCAACAACAG ACTATTCCGG TTATTTTAAA GGGTAAGAAC
CTGCTCGCCG CTGCGCAAAC TGGTACCGGT AAAACCGCAA GTTTTGTATT ACCAATATTA
GAACGCTTAG CCGACACTGA AATCCAGCGT GCAAAACGTA TTCGAGCGTT GATTTTAACC
CCAACTCGCG AACTCGCAGT GCAAGTTCAT GCCAACGTAG TGCAGTACGC CAAGCATTTA
CCATTAACCT CTATTGCCAT TTATGGTGGA GTTGATGAGA AGCCGCAAAA ACAAGCCTTA
ATCGATGGTG TCGATATTTT GGTGGCCACA CCGGGACGTT TACTAGACTT ATATACTCAA
CGTGCCGTGC ACTTTGATGA AGTTGAAGTG TTGGTGCTTG ATGAAGCCGA TAGAATGCTC
GACATGGGCT TTATCGAAGA TATTAATAAA ATCATCGATA AATTACCTTC TGAACGTCAG
AGTTTATTGT TTTCCGCGAC GTTATCAAAC CAAGTGCGAG CGTTAGCGAA AACGGCCATT
AAACGTCCTG TGGAAATTTC AGTGATTGCT GATCGCGATT CAGCACCGAA AATCGAGCAG
TGGTTAACGA CGGTTGATAA AGATAAAAAA TCAGCTTTAT TAAGTCATTT AATTAAAACC
GAAGAGTGGA ACCAAGCACT CATCTTTATC GAAACCAAAC AAGGTGCTGC CAAATTGGTG
AGTCAGCTTG AAAAGCGTGA TATTGCTGCA GAGTGTATTC ACAGTGGCCG AAGCCAGCCG
GTGCGTGAAC AAATTTTAGC TGATTTTAAA TCGGGTAACA TTAAATACCT TGTGGCTACC
GGCATTGCAG CGCGCGGTAT TGATATTGAC GATTTATCGC GTGTTGTTAA TTATGACTTA
CCTTATCCGG CCGATGACTA TATTCATCGT ATTGGTCGTA CCGGTCGTGC GGGCGCTGCT
GGTGTTGCTA TTTCTTTTGT GTCCAATGAT GACTTTAAAA ATTTGTGTAT GATTGAAAGC
CGTTTAGGGC ATTTAATTGA ACGTAAAGAA ATAGCGGGGT TTGAACCCTC GAAGCCAATT
CCTATTTCAG TGTTGAATTT TATTCCTAAA AATCGTCAGC ATAAATCAAC ATCAGCGACA
GATCGACCAA CGCTGAGTTT GGGCAAGTCG AAAACAGCTT CTGCTGATTT TAGAAAAACC
AAACCATCTA AAGCGTCAAC TACGCCTAAG GGTAACAAAC CTAATCCCTG GAACATTTAA
|
|---|
| Protein sequence | MPFSTLGLRD TIVNALHEVG YSQPTPIQQQ TIPVILKGKN LLAAAQTGTG KTASFVLPIL
ERLADTEIQR AKRIRALILT PTRELAVQVH ANVVQYAKHL PLTSIAIYGG VDEKPQKQAL
IDGVDILVAT PGRLLDLYTQ RAVHFDEVEV LVLDEADRML DMGFIEDINK IIDKLPSERQ
SLLFSATLSN QVRALAKTAI KRPVEISVIA DRDSAPKIEQ WLTTVDKDKK SALLSHLIKT
EEWNQALIFI ETKQGAAKLV SQLEKRDIAA ECIHSGRSQP VREQILADFK SGNIKYLVAT
GIAARGIDID DLSRVVNYDL PYPADDYIHR IGRTGRAGAA GVAISFVSND DFKNLCMIES
RLGHLIERKE IAGFEPSKPI PISVLNFIPK NRQHKSTSAT DRPTLSLGKS KTASADFRKT
KPSKASTTPK GNKPNPWNI
|
|---|
| |