| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_2145 |
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| Symbol | |
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| ID | 4279057 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 2552902 |
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| End bp | 2554746 |
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| Gene Length | 1845 bp |
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| Protein Length | 614 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 638134934 |
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| Product | signal peptide peptidase SppA, 67K type |
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| Protein accession | YP_750829 |
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| Protein GI | 114563316 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0616] Periplasmic serine proteases (ClpP class) |
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| TIGRFAM ID | [TIGR00705] signal peptide peptidase SppA, 67K type
[TIGR00706] signal peptide peptidase SppA, 36K type |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.000000233078 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCCGCTA AACCCTCGTT TTTAAAAAGG ATGTTTTTAC TGTTATGGAA TACAGTAAAC
GGTATCCGTA AGTTCATCAT CAACGTAATA TTTTTTGGTT TGTTGGCTGT CATCACTGTG
GTACTTCTCA ACAGCGAAGA TGAAATTGTC GTCGAAGATC AATCAGCATT AGTGCTGAAC
TTGTCTGGGA GCATAGTGGA CCAAAAACAT TATGTAGACC CAATAGAAAT GGCATTTAGC
CAAGGGCAAG CGAATGATCC AGAAGGTGAA ATTCTATTAG CTGACGTACT TTATACAATT
AATAATGCGA CTCAAGACGC CCGCATTACC AGTATCGTAT TGGACTTAGC TGATCTTCGT
GATGCCGGCA TTAGTAAAAT GACCGCCATT GGTGAAGCAT TAACTCAGTT TAAAGCAGCC
AATAAGTCAG TTATCGCAAT GGCCAATGGT TATGATCAAA ATCAATATTT TTTAGCCAGC
TTTGCAGACA AAATATACCT TAATAACCAA GGTATGGTAG CGCTTGATGG CTTAAGCCGT
TATCGCTTAT ATTACAAAGC AGCACTCGAA AAACTCAAAA TTACCACTCA CGTATTTCGA
GTGGGAACGT TTAAGTCAGC TGTAGAGCCC TTTATTCGTG ACGATATGTC TGATGCCGAC
AAAGTCGCCA GCAAAGAATT GTTAAATGAT ATTTGGCAAA GCTACTCGAC TATTGTTGCC
AGCAACCGTC AAATCGCTCC AGATCAATTA GTGTTAAGTA CAGATGAGTA TCTCGCTCAG
CTTGATAAAG CTGAAGGTGA CAGTGCTCAA ATGGCTGTAA ACATGAAATG GGTTGACGAA
CTGGTTTCGG CTGATGCATT CCGTGTCGCT ATGATTGAAC GTGTAGGCAG TGATAAAGAA
GGTAAAAACT TTAAGCAAAT TAGCTTTAAT GATTACCGAA CATTAACCGC ACCAATGCCT
AAATTTGTTG AACAAGACGC AGTGGCCGTT ATCGTTGCTA AAGGCACGAT TCTTAACGGT
AAACAACCTG CCGGACAAAT TGGTGGCGAA AGTACCTCTG CATTGCTCAT GAAAGCACGC
TTTGACGATA AAGTGAAAGC CGTCGTACTT CGTGTTGACA GCCCTGGTGG TAGTGCATTT
GCATCAGAGC AAATTCGTCA AGAAGTGTTA GCGCTAAAAG CTGCAGGTAA GCCTGTGGTT
GTTAGCATGG GTAGCCTTGC TGCATCTGGC GGATATTGGA TATCAGCCAG TGCCGACTAT
ATTGTGGCTA CGCCAACAAC CCTAACAGGT TCAATCGGTA TTTTCGGTAT GTTCGCTACG
TTTGAGCAAG CTCTTAATCA TTTTGGTGTA ACCTCTGATG GTGTCGCAAC ATCTGATTGG
GCAGGTTTAT CGCCTGCACG TGAATTAAAC CCACAAGTTG CCGCGGTAGT ACAACGTCAT
ATTGAACGTG GTTACCATGA GTTTATTTCT CTGGTAGCAA AAGAGCGTCA TATGACGCTA
GAGCAAGTAG ACAATATTGC TCAAGGCCGT GTATGGACAG GTAAACGCGC ACTCACCTTA
GGCCTAGTTG ATGAACTGGG TGATATGGAT GTGGCATTAG CCAAAGCTGC TGATTTAGCG
AAAATGGACA AGTTCGACGT TAAAGTGATT GAGCAAGAGC TAAGCGCTGA ACAACAACTG
ATGCAGCAAA TCATGGGCGC TACTGTGGCT TATGTTCCAG ACAGTGTTCG TCAAACTAGT
TTCATTGAAC GCTTTGCCAA GCAGTGGGCT GGTGCATTTG AAACATTGTC GATGTTTGAT
GACCCTAATC ATGTCTATAT GTATTGCGAA AACTGTAATT ACTAA
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| Protein sequence | MSAKPSFLKR MFLLLWNTVN GIRKFIINVI FFGLLAVITV VLLNSEDEIV VEDQSALVLN
LSGSIVDQKH YVDPIEMAFS QGQANDPEGE ILLADVLYTI NNATQDARIT SIVLDLADLR
DAGISKMTAI GEALTQFKAA NKSVIAMANG YDQNQYFLAS FADKIYLNNQ GMVALDGLSR
YRLYYKAALE KLKITTHVFR VGTFKSAVEP FIRDDMSDAD KVASKELLND IWQSYSTIVA
SNRQIAPDQL VLSTDEYLAQ LDKAEGDSAQ MAVNMKWVDE LVSADAFRVA MIERVGSDKE
GKNFKQISFN DYRTLTAPMP KFVEQDAVAV IVAKGTILNG KQPAGQIGGE STSALLMKAR
FDDKVKAVVL RVDSPGGSAF ASEQIRQEVL ALKAAGKPVV VSMGSLAASG GYWISASADY
IVATPTTLTG SIGIFGMFAT FEQALNHFGV TSDGVATSDW AGLSPARELN PQVAAVVQRH
IERGYHEFIS LVAKERHMTL EQVDNIAQGR VWTGKRALTL GLVDELGDMD VALAKAADLA
KMDKFDVKVI EQELSAEQQL MQQIMGATVA YVPDSVRQTS FIERFAKQWA GAFETLSMFD
DPNHVYMYCE NCNY
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