Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_2108 |
Symbol | |
ID | 4279020 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | + |
Start bp | 2509925 |
End bp | 2512336 |
Gene Length | 2412 bp |
Protein Length | 803 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 638134897 |
Product | (NiFe) hydrogenase maturation protein HypF |
Protein accession | YP_750792 |
Protein GI | 114563279 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG0068] Hydrogenase maturation factor |
TIGRFAM ID | [TIGR00143] [NiFe] hydrogenase maturation protein HypF |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAAACCAT TACAGCAAGT TACCATTATT GTTAAAGGTA TTGTGCAAGG GGTTGGTTTT CGCCCCTTTG TTTTTCGTTT GGCACATCAG TTAACTTTAC TCGGTAGCGT GCTAAATAAT CACCTTGGGG TGACGATTGT TTTACAAGGT AATAGCGAAC TGATTGAACA GTTTATCGAT AAATTAGCTA AATCTCCGCC GCCATTAGCG CGCATTGATG CCATTGAGGT TACTCATCAA GCTCAATTAA GTTTATTTGA CCAATTTAGT ATTATTGATA GCCATGCCGC TACTGACGAA CATGCAAATG TGGCTATTTC GGCCGACATG AGTATTTGCC GAGATTGTCT TAACGACATT AATGACCCTC AAAACCGCCA CTATCAATAC CCATTTACCA ATTGCACCAA TTGCGGTCCG CGCTACACCA TTATCAACAC CCTGCCTTAT GACCGATGCA ACACTGCCAT GGCTGATTTT GAAATGTGCG ATGATTGCCA CGCCGCTTAT ATCAATCCAA TGAATCGACG CTACCATGCA CAACCAGTGA GTTGCCCACA TTGTGGTCCA CAATTAACCT TTAGCGTTAT CAATGCTCGT GCTGAATGTC TTTATGATTC ATCGATGTTG ATGGCATTAG AGCAAGCCGT CGAAATGATA AACCGTGGTG GCATAGTGGC CATTAAAGGT TTAGGCGGTT TTCATTTAGT GTGTGATGCC ACCAATAACG ACGCGGTTGC AGCTCTGCGT CAACGTAAAC AACGCCTCGC CAAGCCATTA GCGATAATGG TGACTAACTT GGCCCAGGCG AAATTATGTG TCAGCGGTAC TGAAACGGAA TGGCAAGTAT TAACCAGCCC TGAGAAGCCG ATTACCTTGA TGACCAAACG TGTTGCTAGT GTTGATGGTA AAGATAATGG TAGAGATAAT TGCGGAAATA TTCACCCTAT CGCACTGAGT CCATTGCTAG CGCCGGGTAT TGATCGCCTT GGAGTATTTT TACCCTACAC ACCATTACAT CATTTATTGA TGCAGCGATT ACACAAACCC ATTGTGGCTA CCAGTGCCAA TCGCAGCGGA GAACCCATTA TTGCTAATCA AGCTGAGATT GAGCAGCATT TAAGCCATGT AGTTGATGGG ATCCTCGGCC ATAATAGGCC GATTATTAAT GCCTGTGATG ACAGCGTGGT ACAAGTGATT GACGGGCAGC TACAAGTCAT TCGATTAGCT CGTGGTTATG CGCCGCTAAC CATTAATTTG CACTCACCGA TGCTATCAAA CAGTAAAAAT AGCGTGTTGG CTGTTGGCGC ACAACAGAAA AATACGGTCG CATTCGGTTT TGCCGATAAT CTGATCGTAT CACCGCACAT TGGTGATTTA TTCACTCTAG AAACAGAGCA ATATTTTAGC CGAAGCTTAG CAACATTTAA GCGTTTGTAT GACTTTAGCC CAAGTCATAT TGTGCATGAT AATCACCCGC AATATGCGCC GACACAATGG GCAGTAAACT ACCAATCTGA ACATCGCCTT TTGCCATCTC ATTGCATTGG CATACAACAC CACTTCGCCC ATGTTTTGTC TGTTATGGCG ATGCACCAAC GCACTGAGCA AGTATTAGGA TTCAGTTTTG ATGGCACAGG CCTAGGTGAT GACGGCACAT TATGGGGCAG CGAAGTAATG CTGGCTGATG TGCACGGTTT TACCACGGTG GCCCACTTTA GTTCGTTTAA GTTAATTGGT GGTGAGCAAG CGATTAAACA CCCAGTTAGA ATTCTGCTGG CATTATTGTT TGAACAAATG TCGCTTGAAC AAGTACTTTC ACTCCCCATT GCCGCTATCG CCGACTTAGG CAGCAAAACT GTCACTAATT TGTATCAGCT GTGGCGTAAC AATAGCCATT GTATTGAATG TCGATCTGTT GGGCGTTTAT TTGATGCTCT TGCTGTAGCG TTAGGTTTTA TTGCTAGCTC GCAGTACGAA GGTCAAGCGG GCATGATGAT TGAAACAGCA GCCAATGCCT ATTATACCGA ATCAAATATT GAGCCTTTAT CTGTAACGCT CAACACCTTA TACGACCAAG AGTCGTTACC TATTCAATGG CACAGTAGCG ACTTTATTAC TCAATTGGTT AACTGCGCGG TGGAATACTC ACATAACCCT TTAATTAAAA AACAAATATG TTGGCATTTT ATCAATATGA TTAGTCAGCA ATTGGATAGA GTTGGTCAAC AATATCCCCA ATTACCACAG GTATTTTGTG GTGGTGTATT TCAAAACAAA ACCTTACTCA GCCAGTGTAT TGATGATTGT AAACGTGGCC AACGGCAAAT TTTACCCAGT GGCCATATTC CCATTAATGA CGGTGGTATT GCATTAGGCC AATTGTGGTA TGGCATACAT CACATGGCGT AA
|
Protein sequence | MKPLQQVTII VKGIVQGVGF RPFVFRLAHQ LTLLGSVLNN HLGVTIVLQG NSELIEQFID KLAKSPPPLA RIDAIEVTHQ AQLSLFDQFS IIDSHAATDE HANVAISADM SICRDCLNDI NDPQNRHYQY PFTNCTNCGP RYTIINTLPY DRCNTAMADF EMCDDCHAAY INPMNRRYHA QPVSCPHCGP QLTFSVINAR AECLYDSSML MALEQAVEMI NRGGIVAIKG LGGFHLVCDA TNNDAVAALR QRKQRLAKPL AIMVTNLAQA KLCVSGTETE WQVLTSPEKP ITLMTKRVAS VDGKDNGRDN CGNIHPIALS PLLAPGIDRL GVFLPYTPLH HLLMQRLHKP IVATSANRSG EPIIANQAEI EQHLSHVVDG ILGHNRPIIN ACDDSVVQVI DGQLQVIRLA RGYAPLTINL HSPMLSNSKN SVLAVGAQQK NTVAFGFADN LIVSPHIGDL FTLETEQYFS RSLATFKRLY DFSPSHIVHD NHPQYAPTQW AVNYQSEHRL LPSHCIGIQH HFAHVLSVMA MHQRTEQVLG FSFDGTGLGD DGTLWGSEVM LADVHGFTTV AHFSSFKLIG GEQAIKHPVR ILLALLFEQM SLEQVLSLPI AAIADLGSKT VTNLYQLWRN NSHCIECRSV GRLFDALAVA LGFIASSQYE GQAGMMIETA ANAYYTESNI EPLSVTLNTL YDQESLPIQW HSSDFITQLV NCAVEYSHNP LIKKQICWHF INMISQQLDR VGQQYPQLPQ VFCGGVFQNK TLLSQCIDDC KRGQRQILPS GHIPINDGGI ALGQLWYGIH HMA
|
| |