Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_2104 |
Symbol | |
ID | 4279016 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | + |
Start bp | 2504906 |
End bp | 2506609 |
Gene Length | 1704 bp |
Protein Length | 567 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 638134893 |
Product | nickel-dependent hydrogenase, large subunit |
Protein accession | YP_750788 |
Protein GI | 114563275 |
COG category | [C] Energy production and conversion |
COG ID | [COG0374] Ni,Fe-hydrogenase I large subunit |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAGTAAAC GTGTCGTTAT CGACCCTATC ACCCGTATCG AAGGCCATTT ACGTGTCGAA GTTGAAGTGG ATGACAATAA TGTCATTACC AAGGCTTGGT CTTCGTCGAC CTTATGGCGA GGTATTGAGG TTATTTTAAA AGGCCGAACT CCAATGGATG TGGGCTTAAT TGTGCAGCGT ATTTGTGGCG TATGTACCTA TTCGCATTAT CGTTGCGGTA CTGAGGCAGT TGAAAATGCC CTTGGGGTTA AGATCCCACT TAATGCTAAA TACCTGCGCA GCATAATGCA GTCATCACTC TACATGCATG ATCATATTGT GCATTTTTAT CATCTACATG GTTTGGATTG GGTGGATGTG GTATCAGCAT TAAGTGCCGA CCCAGCCTTA GCGGCTAAAG TGGCAATGAA TTACTCTGAT GCACCGATTG CTGCCGGTGA AGGTGAATTA AAAGCGGTAC AGGCACGAGT GAAAGGCTTG GTCGAAACCG GAAAACTGGG TCCATTTGCC AATGCCTATT GGGGTAATGG TACTTATCGT TTTACCCCTG AGCAAAACCT CATTGCGTTA TCGCATTATT TAAAAGCACT TGAAGTACAA CGTGTGGCAG CTGAAATGTT AGCTATTTTT GGCGGCAAAT CGCCACATCC ACAATCTATT GTTGTGGGCG GCGTAACCTC AGTACGTGAC ATGTTAAGCC CTGCCCGTTT ACAAGAATGG AAACAAAAGC ACGCTATCGT GCAAGACTTT ATTGAGCGAG CTTACCAAGC CGATATTGTG ATGGCAGCAG AAGCATTTGG TACAGAAGCC AGTGTACTTG GCGGCGTAAA TGTTAACAGT TTCTTGTGCG GTGAAGATTT TATTACGACC GATGGCGAGT ACTTATTTAA CCAAGGGGTC ATTTTAAACG GTGATTTAGC CAATGTATTG GATATCGACC CGAGCTTGAT TAAAGAAGAT GTGACTCACG CCTGGTATAA AGCTGATGGT CCGCAACATC CATATCAAGG AACCACCATT CCTGATTACA CCGGGTTTAT TGAGCGTGAC ACTGTGTATG GCAAATTGCC AACCATTAAT GGCGATGGTA AATACTCGTG GGTTAAGTCT CCGCGTTACC AAGATGAACC GATTGAAGTA GGTCCACTAG CGTGTTTGTT GGTTAACTAT GCCCGTGGTA ATCAAGTTGT GGTCAATGCG GTTGATGGTT TGTTAGCTCG CACTGGTTTG CCTCTTGAAG CATTGTTTAC CACTTTAGGC CGTACTGCTG CACGTATGCT GCAAACGGTA TTGGTTGGCC AGGCCAGTTT GCAAACCTTT GATGCTTTAC TGGTAAACAT ACAGTCGGAT CAGTCTACTT ACGTTAAACC TGAAATAGAC CCAGACCGTG TTTACGAAGG TTATTCGATG ATTGAAGCCC CTCGCGGCAT GTTAAGTCAT TGGATCCGGA TTAAAGATGC CAAAGTCGAA AACTACCAAG CTGTGGTTCC TACTACCTGG AACGCAGGCC CTGTGGATGC TAATGGTAAA ATGGGCCCAT ACGAAGCTTC GTTGATTGGT TTGAAACTTG AAGACCCAAC TAAGCCGTTA GAAGTCATTC GCATTATTCA TTCCTTTGAT CCTTGTATGG CGTGTTCCGT TCACGTGATG GATTACAAGA AACATACCCT AGGTCAATTT AAAATTGATC CAAATGGGTT TTAA
|
Protein sequence | MSKRVVIDPI TRIEGHLRVE VEVDDNNVIT KAWSSSTLWR GIEVILKGRT PMDVGLIVQR ICGVCTYSHY RCGTEAVENA LGVKIPLNAK YLRSIMQSSL YMHDHIVHFY HLHGLDWVDV VSALSADPAL AAKVAMNYSD APIAAGEGEL KAVQARVKGL VETGKLGPFA NAYWGNGTYR FTPEQNLIAL SHYLKALEVQ RVAAEMLAIF GGKSPHPQSI VVGGVTSVRD MLSPARLQEW KQKHAIVQDF IERAYQADIV MAAEAFGTEA SVLGGVNVNS FLCGEDFITT DGEYLFNQGV ILNGDLANVL DIDPSLIKED VTHAWYKADG PQHPYQGTTI PDYTGFIERD TVYGKLPTIN GDGKYSWVKS PRYQDEPIEV GPLACLLVNY ARGNQVVVNA VDGLLARTGL PLEALFTTLG RTAARMLQTV LVGQASLQTF DALLVNIQSD QSTYVKPEID PDRVYEGYSM IEAPRGMLSH WIRIKDAKVE NYQAVVPTTW NAGPVDANGK MGPYEASLIG LKLEDPTKPL EVIRIIHSFD PCMACSVHVM DYKKHTLGQF KIDPNGF
|
| |