| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_2025 |
|---|
| Symbol | rplT |
|---|
| ID | 4278937 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | - |
|---|
| Start bp | 2398541 |
|---|
| End bp | 2398900 |
|---|
| Gene Length | 360 bp |
|---|
| Protein Length | 119 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 638134812 |
|---|
| Product | 50S ribosomal protein L20 |
|---|
| Protein accession | YP_750709 |
|---|
| Protein GI | 114563196 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0292] Ribosomal protein L20 |
|---|
| TIGRFAM ID | [TIGR01032] ribosomal protein L20 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.240457 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCAAGAG TTAAGCGTGG TGTAACCGCA CGTGCTCGTC ACAAGAAAGT TTTAAAATTA
GCTAAAGGTT ATTATGGCGC TCGTAGCCGT ACTTACCGTG TTGCTGTTCA GGCAGTAACT
AAAGCTGGTC AATATGCTTA CCGTGACCGT CGTCAGAAAA AACGTCAATT CCGTCAGTTA
TGGATTGCAC GTATTAATGC AGCGTCTCGT CAAAATGGTC TGTCTTACAG CCGTTTCATT
AACGGCTTGA AAAAGGCGTC TATTGAAATC GATCGTAAGA TTTTGGCTGA CATCGCTGTT
TTCGACAAAG TTGTTTTTGC AACTTTAGTT GAGAAAGCAA AAGAAGCGTT AACTAAGTAA
|
|---|
| Protein sequence | MPRVKRGVTA RARHKKVLKL AKGYYGARSR TYRVAVQAVT KAGQYAYRDR RQKKRQFRQL
WIARINAASR QNGLSYSRFI NGLKKASIEI DRKILADIAV FDKVVFATLV EKAKEALTK
|
|---|
| |