| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_1988 |
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| Symbol | |
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| ID | 4278900 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 2355843 |
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| End bp | 2357267 |
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| Gene Length | 1425 bp |
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| Protein Length | 474 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 638134775 |
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| Product | lytic transglycosylase, catalytic |
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| Protein accession | YP_750672 |
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| Protein GI | 114563159 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1388] FOG: LysM repeat |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.49985 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGAGAGCAT CAATCTTCCT TATTGCGACA GGTTTTATCC TGTTGAGTGG TTGCCAAACT
GTTGCTGTAG AAGACGTCGA AGCAGAAAAA AGTCTTAATG GTGTGAATAA ACTAACATCA
TTGAAAGTTC CCAAATTGTT AGCTCGGCGC AATTATCAAG ACAGCGGTGA TGTGTGGGAA
CGCATTCGTT ATTCAATGGA CATGCCCATT CCAGACCAAC AATTAGTTAA CCAATACCGT
GATTGGTATA TTAATAATCC ACAGCATCTT GAGCAGATAT CTCAGCGCGC CAAGCCGTTT
TTATATTTAA TTGTTCAAGA GTTTGAACAT CGAGATTTAC CCATCGAACT CGCCTTACTC
CCTATGGTAG AAAGTTCATT TAATCCTTTC GCTTATTCCA GTGCCGACGC ATCAGGCCTG
TGGCAATTTA CCTCCCCAAT GGCCAGCCAT TTTGGCCTAG AGATGAATTG GTGGTATGAC
GGCAGAAGGG ATGTGCCTGC TGCAACTACC GCTGCATTAG ATATGCTCGA ATACCTGTAT
AAAAAAACTG ACAACTGGTT ATATGCATTA GCTGCATACA ACGCCGGTGA AGGGCGCTTG
CGTGAGGCGA TTAGATATAA TGAAGCCAGA GGGCTAAGCA CCGACTTTTG GTCTTTACCC
TTACCTAAAG AAACTCGGCA ATATGTACCA CAATTGCTGG CAATAGCAGA TGTGATTAAA
CATTCTGAAA GCTACGGCAT CAGTCTTAAA TCCATTCCTA ATAAACCACT AGTTGAAGTT
ATTGATGTCG GTAGCCAAAT TGACATCGCA GTTGCTGCCG ATCTAGCCAA TATATCCATT
GCTCGGTTAC AAAAATTGAA TCCAGGGTTT AATCGCTGGG CAACATCACC CGATGGACCG
CATCAATTGA TAGTGCCCGT GAGTAAAGTC AGTGGGTTTA AACAAGCTCT TGCGGATACT
GATATTAGCG CTAGAGTAAA ATGGTTTAAA TATCAGATTA GAGCTGGCGA TAATATTAGT
GTCATTGCAA AACGTCACCT TACAACGGTG TCTGAAATAA AAGCGATGAA TGATATTAAT
GGCGATAAGA TCGTTGCGGG TCAATTTTTG TATATGCCAC AAGGCGTATC GAGCATGACA
CCAGAGGTCG AACTCGCTTC AACAAACACA GCTCAAGTAT CAAGCAAAAA GCAAGCTGCA
CCAAACAAAC AACCAAGGAT CGTCAGCACA TCTAATCAGC CAGCAGTTCG GAGCGATCAC
ACGGTAAAAT ATGGCGATAC TCTTTGGAGT ATTGCCAAAG TGTATAAGGT CAGTGTGGAA
CAAATTATCG CTTGGAACAA AATGACGGAC AAAGACAAGT TGACGGTAGG CAAAACCCTG
CAGTTTTATC AACAGCCCTT CCAGCAACAG CAGACTCAAT TGTAA
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| Protein sequence | MRASIFLIAT GFILLSGCQT VAVEDVEAEK SLNGVNKLTS LKVPKLLARR NYQDSGDVWE
RIRYSMDMPI PDQQLVNQYR DWYINNPQHL EQISQRAKPF LYLIVQEFEH RDLPIELALL
PMVESSFNPF AYSSADASGL WQFTSPMASH FGLEMNWWYD GRRDVPAATT AALDMLEYLY
KKTDNWLYAL AAYNAGEGRL REAIRYNEAR GLSTDFWSLP LPKETRQYVP QLLAIADVIK
HSESYGISLK SIPNKPLVEV IDVGSQIDIA VAADLANISI ARLQKLNPGF NRWATSPDGP
HQLIVPVSKV SGFKQALADT DISARVKWFK YQIRAGDNIS VIAKRHLTTV SEIKAMNDIN
GDKIVAGQFL YMPQGVSSMT PEVELASTNT AQVSSKKQAA PNKQPRIVST SNQPAVRSDH
TVKYGDTLWS IAKVYKVSVE QIIAWNKMTD KDKLTVGKTL QFYQQPFQQQ QTQL
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