Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_1946 |
Symbol | |
ID | 4278858 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | - |
Start bp | 2309678 |
End bp | 2311360 |
Gene Length | 1683 bp |
Protein Length | 560 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 638134733 |
Product | choline dehydrogenase |
Protein accession | YP_750630 |
Protein GI | 114563117 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG2303] Choline dehydrogenase and related flavoproteins |
TIGRFAM ID | [TIGR01810] choline dehydrogenase |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.110511 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCTAATG AATACGATTA TATTATTGTC GGTGCCGGTA GCGCAGGTTG TGTATTAGCC AACCGCTTAA CGGAAAATCC AGACAATAAA GTCCTGATAC TTGAAACCGG TGGTAGCGAC AAGAGCATTT TTATCCAAAT GCCAACCGCC CTTTCAATTC CCATGAATAC TAAAAAGTAT GCATGGCAGT TTGAAACCGA AGCCGAACCA CATTTGGACA ATCGCCGTAT GCATTGCCCG CGTGGCAAAG TGTTAGGCGG TTCATCATCA ATCAATGGCA TGGTCTACGT ACGTGGTCAT GCGCGTGATT TTGATGAGTG GCAACAACAA GGTGCAAAAG ACTGGGATTA TGCTCACTGT CTGCCTTACT TTAAGAAAGC TGAAACATGG TCTTTTGGCG GTAATGTTTA TCGCGGTGAT AAAGGCCCAT TAGCGGTTAA TAACGGTAAT GAAATGAAAA ACCCGTTATA TCAAGCTTTT GTTGATGCAG GTGTCGATGC CGGCTACCTA GCCACTGATG ATTACAATGC CAGTCAGCAA GAAGGCTTTG GCCCAATGCA CATGACCGTT AAAAACGGCG TACGTTGGTC TACGGCAAAT GCGTACCTTC GCCCTGCAAT GAAACGCCCT AATTTAACCG TGGTCACTCA TGCGCTTGTG CATAAAGTGA TTATGCAAGG TAAAACGGCT GTCGGCGTTC GTTACGAACG TAAAGGCGAG TTGATTGATG TTAACTGCAA TAAAGAAGTG ATTTTATCTG CAGGTTCAAT TGGTTCACCG CATATTTTAC AACTGTCGGG TATTGGTGAT TCAAGCACAT TAGCTAACGC TGGAATTGAG CAAGTACATC AATTACCTGG TGTTGGTCAG AATCTGCAAG ACCACTTAGA GTTTTACTTC CAATTTAAGT GCTTAAAGCC GATATCGCTT AATGGCAAAA TTGATCCGTT AAACAAATTG TTTATTGGTG CTCGCTGGAT TTTAAATAAG TCAGGTTTGG GTGCAACTAA CCATTTTGAA TCGTGTGGTT TTATCCGCTC AAAAGCGGGC TTAGAGTGGC CTGATTTACA GTACCACTTC TTACCTGCTG CCATGCGTTA CGACGGAAAA GAAGCGTTTG CTGGCCATGG TTTCCAAGTT CATATTGGCC ACAATAAACC TAAAAGCCGT GGCGCAGTAA CGGTTGTATC AAATGATGCC AAGGTTGCCC CACAAATTCA GTTCAATTAT TTATCGCATC AAGATGATAT TGAAGGCTTT AGAGCGTGTG TTCGTTTAAC CCGTGAAATT ATTAATCAAC CGGGTTTAGA TGAATATCGT GGTGAAGAAA TTCAACCAGG CTTAGCAATA CAGACAGATG AAGAAATAGA CCGTTTTGTT AGAAGCTCAG TAGAAAGCGC TTACCACCCT TCTTGCTCAT GCAAAATGGG TGAAGATGAG ATGGCAGTTG TCGACTCGGA AACAAAAGTA CATGGTATTA ATGGTTTACG AGTAGTTGAT TCGTCAATTT TTCCGACCAT TCCAAATGGC AATTTGAACT CCCCGACGAT AATGGTCGCC GAGCGCGCTG CCGATATTAT TTTAGGCAAC AAACCTCTTG CGCCAAGTTT GGCAAAAGTG ACTATTGCTA AGCAATGGCA AACATCACAA CGATTACAAG CGCCTAAACG ACAAATTGAT TAA
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Protein sequence | MSNEYDYIIV GAGSAGCVLA NRLTENPDNK VLILETGGSD KSIFIQMPTA LSIPMNTKKY AWQFETEAEP HLDNRRMHCP RGKVLGGSSS INGMVYVRGH ARDFDEWQQQ GAKDWDYAHC LPYFKKAETW SFGGNVYRGD KGPLAVNNGN EMKNPLYQAF VDAGVDAGYL ATDDYNASQQ EGFGPMHMTV KNGVRWSTAN AYLRPAMKRP NLTVVTHALV HKVIMQGKTA VGVRYERKGE LIDVNCNKEV ILSAGSIGSP HILQLSGIGD SSTLANAGIE QVHQLPGVGQ NLQDHLEFYF QFKCLKPISL NGKIDPLNKL FIGARWILNK SGLGATNHFE SCGFIRSKAG LEWPDLQYHF LPAAMRYDGK EAFAGHGFQV HIGHNKPKSR GAVTVVSNDA KVAPQIQFNY LSHQDDIEGF RACVRLTREI INQPGLDEYR GEEIQPGLAI QTDEEIDRFV RSSVESAYHP SCSCKMGEDE MAVVDSETKV HGINGLRVVD SSIFPTIPNG NLNSPTIMVA ERAADIILGN KPLAPSLAKV TIAKQWQTSQ RLQAPKRQID
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