Gene Sfri_1940 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_1940 
Symbol 
ID4278852 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand- 
Start bp2302010 
End bp2303020 
Gene Length1011 bp 
Protein Length336 aa 
Translation table11 
GC content41% 
IMG OID638134724 
Productglyceraldehyde-3-phosphate dehydrogenase, type I 
Protein accessionYP_750624 
Protein GI114563111 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0057] Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase 
TIGRFAM ID[TIGR01534] glyceraldehyde-3-phosphate dehydrogenase, type I 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.238666 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACTATCC GTGTAGCAAT TAACGGCTAT GGCCGTATCG GTAGAAATGT TTTACGTGCA 
CTGTACGAAA GCGAAAAAAA TTATCCAATC GAAATCGTTG CATTAAACGA TTTAGGTGAT 
GCATCTATTA ATGCTCACTT AACTAAGTAC GATACTGTAC ATGGTCGCTT CAACGCAAAA 
GTTGATCACG ACGATGAAGC TATCTATGTT AATGGCGACA AGATCTTAAC TTTCCAAGAA 
CGTGACCCAT CAAAGTTACC TTGGGCTGAG CTGAAAATTG ATATCGTTTT CGAATGTACT 
GGTATTTTCA CTTCTAAAGA ATCTGTGCAA CCGCACCTTA TCGCTGGCGC AAAGAAAGTA 
CTTATTTCTG CACCAGGTAA GAATGTTGAT GCCACTGTTG TTTACGGTGT AAACAACGAA 
GTGTTAACTG CTGATATGAC AGTAGTTTCA AATGCTTCTT GTACAACTAA CTGTTTAGCG 
CCTATTGCTA AGCCGTTAAA TGATGAGCTT GGTATTGAGT CTGGTTTAAT GACCACAATC 
CACTCTTACA CTAACGATCA ACGTTTATCT GATGTGTATC ACACAGATTT ACGTCGTGCT 
CGTGCTGCGG CAATGTCTAT GATCCCAACC CAAACCGGTG CAGCTGCTGC AGTAGGTTTA 
GTGGTTCCTG AGCTTCAAGG CAAATTTGAC GGTTTAGCGG TACGTGTACC AACAATTAAC 
GTGTCTTTAG TTGACTTAAC TTTCTTAGCG TCACGCGACA CTACTGTTGA AGAAGTTAAT 
GCCATCATTA CTCGTGCTTC ACTACAGTCT CCAATGTCTG AAGTATTAGC GATTAACGAA 
GAACCATTGG TGTCTATCGA CTTTAACCAT AATCCTTTCT CTTCTAATTT CGACGCAACA 
CAAACTCGTG TTAATGGTCG TTTAGTGAAA GTGATGTCTT GGTATGATAA CGAATGGGGT 
TTCAGTAACC GCATGTTAGA CAACGCTGTT GCGTTAATGA ACGCTAAATA A
 
Protein sequence
MTIRVAINGY GRIGRNVLRA LYESEKNYPI EIVALNDLGD ASINAHLTKY DTVHGRFNAK 
VDHDDEAIYV NGDKILTFQE RDPSKLPWAE LKIDIVFECT GIFTSKESVQ PHLIAGAKKV 
LISAPGKNVD ATVVYGVNNE VLTADMTVVS NASCTTNCLA PIAKPLNDEL GIESGLMTTI 
HSYTNDQRLS DVYHTDLRRA RAAAMSMIPT QTGAAAAVGL VVPELQGKFD GLAVRVPTIN 
VSLVDLTFLA SRDTTVEEVN AIITRASLQS PMSEVLAINE EPLVSIDFNH NPFSSNFDAT 
QTRVNGRLVK VMSWYDNEWG FSNRMLDNAV ALMNAK