| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_1934 |
|---|
| Symbol | |
|---|
| ID | 4278846 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | + |
|---|
| Start bp | 2293183 |
|---|
| End bp | 2294211 |
|---|
| Gene Length | 1029 bp |
|---|
| Protein Length | 342 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 638134718 |
|---|
| Product | succinylglutamate desuccinylase |
|---|
| Protein accession | YP_750618 |
|---|
| Protein GI | 114563105 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG2988] Succinylglutamate desuccinylase |
|---|
| TIGRFAM ID | [TIGR03242] succinylglutamate desuccinylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.00118272 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGTTATCTG ACCTGATGAT AAACCGCGAT TTTTTAGCCT ATACCTTAGC CAATCCAAAT
CAATTACCTG CGGCATACGA TTTTATGTTG GCAGATCATA CTCGCGTAGA TGTGTGGGAT
ACGGGAGTGA TTGTATTTAC GCCGGCTAAT GCCACCAAAG ATATCGTGCT GTCTTGTGCT
GTGCACGGTA ATGAAACTGC GCCGATTGAA ATCTGTAATC AACTCATTAA AGATTTGCTC
AGCCAACGCA TTATTGCCAA GCAGCGTGTG ATGTTTTTAA TTGGTAACCC TACTGCTATT
CTCAATAAAA CCCGTTTTAT TGATGAAAAC ATGAATCGTC TTTTTAGTGG CGCGCATTCT
AAAGGCGAGG GCTTAAGCCA TCCAGAGCGT CACCGTGCCA AAGCATTAGA GCAATACGTG
GCTGATTTTT TCAATGCTAA TAGCGACAAC CAACGTATTC ATTACGACTT ACATACTGCC
ATCCGTGCCT CAAAGCATGA AAAGTTTGCC ATTTACCCAT ACCGCCCAGG CCGTGCTTTC
AGCGGTGAAC AAATTATGTT TTTGGCGGCA TGTGGCGTTG ATACTATGTT GTTTCACCAC
GAACCAACAA CAACGTTTAG TTATTATTCG TCACAGCAAT TTCAAGCAGA TGCTTTTACG
GTGGAATTAG GCAAAGTGAT GCCATTTGGC CAAAATGACA TGAGTCGTTT TGCACAAACT
CATACTATGC TTGAAAAGTT GATTACTGAA ACTAAGTTAG CACCTGTTGA GTTCGACCCT
AGCAAGGTCA ACTTGTATAA GGTATCGCGC TCTATTAACA AGCACTTTGA TGATTTTGAA
TTTAGCTTTG CAGGCGATGC AGAAAACTTC AGTGCCTTTA GTCAGGGCGA GGTGTTAGCG
ACAGAAGGTG GTAATGCCAT CATTGTGGAA TACCCACAAG AAGCCATCGT ATTTCCCAAT
GCAAATGTGC CTATTGGGCA ACGTACAGTG CTATGTTTAG TACCTGCACC AAACGAGTCA
ATTTTATAG
|
|---|
| Protein sequence | MLSDLMINRD FLAYTLANPN QLPAAYDFML ADHTRVDVWD TGVIVFTPAN ATKDIVLSCA
VHGNETAPIE ICNQLIKDLL SQRIIAKQRV MFLIGNPTAI LNKTRFIDEN MNRLFSGAHS
KGEGLSHPER HRAKALEQYV ADFFNANSDN QRIHYDLHTA IRASKHEKFA IYPYRPGRAF
SGEQIMFLAA CGVDTMLFHH EPTTTFSYYS SQQFQADAFT VELGKVMPFG QNDMSRFAQT
HTMLEKLITE TKLAPVEFDP SKVNLYKVSR SINKHFDDFE FSFAGDAENF SAFSQGEVLA
TEGGNAIIVE YPQEAIVFPN ANVPIGQRTV LCLVPAPNES IL
|
|---|
| |