Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_1920 |
Symbol | |
ID | 4278832 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | - |
Start bp | 2273286 |
End bp | 2274950 |
Gene Length | 1665 bp |
Protein Length | 554 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 638134704 |
Product | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase |
Protein accession | YP_750604 |
Protein GI | 114563091 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG2027] D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4) |
TIGRFAM ID | [TIGR00666] D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAATTCCA TTCTTTTTTG TCTCCCCCAG CCTCGTTTCT TTCATAAACA ACCATCTTTG CGGTTCACTC AAGCTTTATG TCTGCTAGGA GCATTTATTA CCTCAAGCCT GCCCAATGTA TCGCTCGCAG CAGAAGTCCC CAGCCAGGTA GCACTGAGTC AGCAACAAAC AATCAATAGC GATAATATTA ACCAGCAACC TACAGCATTG TATCTTGATA ATATGCTGCA GCTACTAAAA CCAGCACATT CACAGCTAGG CATCACAGTG TGGGACATGA CGACTCAAAA AACAGTATTT GAGTACAACA ATCAATCGTT AATGCAGCCG GCAAGTGTTC AAAAACTATT AACCGCATTG GCTGCAACTA AACAACTCGG TAAAGACTTT ATTTACCAAA CTCGCTTAAC CACGTTAGCC CAGCAACCTC TGGATAAAAG TTTGATTGAA AATGGCATAT ATTCTGGCGA TATTTACATA GAATTTAGTG GCGATCCAAC CTTAAAATAC CAAGATTTGC GACAGTTACT TGCCTCTTTA AGTCAGTTAG GTATTACTGA GCTTACGGGG AATATTGTAT TAACCAGCGA GCAAGATAGC CAACTGCAGG CGCCTGGTTG GGTATGGGAT GATTTAGGGA TCTGCTACGC GGCGCCAATA TCGCCTTTCA TCATTGATAA AAATTGTGTC TATGGTCGAT TAGCAACAAC GGGCTACAAT AAAGTGGCCA ACATCACCAT GATGGGAAAT CGGCCCATTG AAATCAGCAA TGATGCTTAT TTTGTCACCC CAATTGTCAA CCGACCTGTC GCTAAACCCG CTGTTCAGAC ATTAACTGAT GCGGTTGTGC TTCCTGCATA CCTCACGGAA TCAGTACCAC AGTGTCAATT AACGTTAAGT CGTTTCGATA ATAATCGCTA TCATCTGAGT GGCTGTCATG TCGGGGCTAA ATCGTTACCT TTAGCAATAG CTATTACCGA ACCACAATTG TACGCGCAAC AGATCGTAGC CAAACAATTG GCTTCTTTAG GTATTGTGCA TCAGCTACCC ATTACAGCAA GCATAATGAA CACAGAAGCG CAGTTTATGG CTCAAAGACA AGTCATCGCC AGCCACCAAT CTGCAGCCTT GCCTCAGTTA CTTGAAACCA TGTTGCTCAA ATCAGATAAT TTAATTGCCG ACAGTTTATT AAAAAAATTG GGTGAGGTTT ATTATCAAGC ACCAAGTGAC TTTGCCCGGA GTGGCCAAGC ATTGAAAACC ATTCTGTATT CAATTGGCAT CGATTTATCA AATGCAAACA TCGCTGATGG CTCTGGTTTG TCGCGTTATA ATTTACTCAC GCCTGAACAC GTATTAAGTG TACTTACTAC CCTATACCAA CAACCTGAAT ACCGCTTCTT ACTCGAGTTG TTACCACAAT CTGGTGTAAG TGGTACTTTG CGCTATAAAC GCTATTTCAA TAAATCTCCG TTGAAAAACC ACGTGTTTGC TAAAACTGGC AGTATGCTGG GCATTGCAAA CTTAGCGGGA CGAGTTAATG TAAGTAATGG TCATGATTAT TTATTTGTTT TATTCGAAAA TGGGTTAAGT CCGCAGATTA AAAAACAACA AAAAGCGCCT TTTTCGGCGG TGTTTTTGCA AACCATGATG GATGTCCCAA GATAA
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Protein sequence | MNSILFCLPQ PRFFHKQPSL RFTQALCLLG AFITSSLPNV SLAAEVPSQV ALSQQQTINS DNINQQPTAL YLDNMLQLLK PAHSQLGITV WDMTTQKTVF EYNNQSLMQP ASVQKLLTAL AATKQLGKDF IYQTRLTTLA QQPLDKSLIE NGIYSGDIYI EFSGDPTLKY QDLRQLLASL SQLGITELTG NIVLTSEQDS QLQAPGWVWD DLGICYAAPI SPFIIDKNCV YGRLATTGYN KVANITMMGN RPIEISNDAY FVTPIVNRPV AKPAVQTLTD AVVLPAYLTE SVPQCQLTLS RFDNNRYHLS GCHVGAKSLP LAIAITEPQL YAQQIVAKQL ASLGIVHQLP ITASIMNTEA QFMAQRQVIA SHQSAALPQL LETMLLKSDN LIADSLLKKL GEVYYQAPSD FARSGQALKT ILYSIGIDLS NANIADGSGL SRYNLLTPEH VLSVLTTLYQ QPEYRFLLEL LPQSGVSGTL RYKRYFNKSP LKNHVFAKTG SMLGIANLAG RVNVSNGHDY LFVLFENGLS PQIKKQQKAP FSAVFLQTMM DVPR
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