Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_1897 |
Symbol | |
ID | 4278809 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | + |
Start bp | 2244642 |
End bp | 2245337 |
Gene Length | 696 bp |
Protein Length | 231 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 638134681 |
Product | aspartate racemase |
Protein accession | YP_750581 |
Protein GI | 114563068 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG1794] Aspartate racemase |
TIGRFAM ID | [TIGR00035] aspartate racemase |
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Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAACAA TCGGTATGAT AGGTGGTATG AGTTGGGAGT CGACACTCAA TTATTACAAA GCCATTAATC AAGGTGTTAA GTCTGCATTA GGTGGGCTGC ATTCGGCCAA AATTTGTTTA TACAGTGTCG ATTTTGCTGA AATAGAAACC CTGCAACATA AAGGATTGTG GCACGATACT GCTATTCATT TAACCACAGC CGCTAAAGCG GTTGAAGCTG GCGGGGCAGA CTTCTTATTG ATTTGTACCA ATACCATGCA CAAAGTGGCT GATGATATCC AAGCACAAAT CTCGATACCT ATTTTGCATA TTGCAGATGC CACAGCGGAG GTGTTGTTAG CCGATGGGAT CAGTAAAGTC GGCCTATTGG GCACGCGCTT TACCATGGAA CAGGACTTTT ATAAGCAACG GATAAGTGAT AACTATCCCA TTGAGGTACT GGTTCCTTCA CCACACGAGC AAACATTAAT TCATGACGTG ATATATCAAG AGCTATGTCT GGGCACGATA AATCCGCAAT CACGACAATG CTATCTTGGC ATTATTGATA AATTATATGA GCAAGGGGCT GAGGCGGTGA TTTTAGGTTG TACAGAGATA GCCCTATTAG TGCAGCAACA ACATACGCAT GTTCCTTTGT ATGATACGAC TCAAATTCAT GCCAATAAGG CCGTTATGCT GGCCTTAGCT AAGTAA
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Protein sequence | MKTIGMIGGM SWESTLNYYK AINQGVKSAL GGLHSAKICL YSVDFAEIET LQHKGLWHDT AIHLTTAAKA VEAGGADFLL ICTNTMHKVA DDIQAQISIP ILHIADATAE VLLADGISKV GLLGTRFTME QDFYKQRISD NYPIEVLVPS PHEQTLIHDV IYQELCLGTI NPQSRQCYLG IIDKLYEQGA EAVILGCTEI ALLVQQQHTH VPLYDTTQIH ANKAVMLALA K
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