Gene Sfri_1888 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_1888 
Symbol 
ID4278346 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand+ 
Start bp2232644 
End bp2233285 
Gene Length642 bp 
Protein Length213 aa 
Translation table11 
GC content40% 
IMG OID638134672 
Producttranscriptional regulator, TetR family protein 
Protein accessionYP_750572 
Protein GI114563059 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCAAGCC GTACTGATAC AAAAACAAGA ATACTCGATG CAGCTGAAAA GTTGTTCGCT 
GAAAGAGGTT TTTCTGAAAC GTCGTTACGA CTGATCACCA GCAAAGCTGA AGTCAATTTG 
GCATCTGTTA ATTACCATTT TGGTTCGAAA AAAGAATTAA TTCGTGCTGT ATTAGCAAGA 
TACTTAGATG TGTTTATGCC AAGCGCCGCG ATAGAGATTA AACGTATACA TCATGCGCCT 
GAAAATTCGT CACTAAATGA GATTTTTTCT GCTTTAATTA AACCGTTACT TGAGCTTAAT 
AAAGTACGCA ACGGCGGCAC GATTATTTTC TTGCAGTTGT TAGGTCGTGG TTATATTGAA 
AGCCAAGGTC ATTTGCGCTG GTTTATTACC ACACATTATG GCGAACATTT AGCGACGTTC 
GTACAAGCTG TATCGGCAAG TGCACCACAC ATTCCTGCGG CAGAAATGTT TTGGCGTTTG 
CATTTTACTC TAGGAACTAT AGTGTTCACT ATGGCTTCTG CAGATGCACT AAATGAAATT 
GCTGCAGCAG ATTATGGCGA ACACAACAAT ATTGAAGCCA TTATACGTAA AGTTATCCCC 
TACATGGCAG CAGGTGTTGC TGTCCCTGTG TTAACAAACT AA
 
Protein sequence
MASRTDTKTR ILDAAEKLFA ERGFSETSLR LITSKAEVNL ASVNYHFGSK KELIRAVLAR 
YLDVFMPSAA IEIKRIHHAP ENSSLNEIFS ALIKPLLELN KVRNGGTIIF LQLLGRGYIE 
SQGHLRWFIT THYGEHLATF VQAVSASAPH IPAAEMFWRL HFTLGTIVFT MASADALNEI 
AAADYGEHNN IEAIIRKVIP YMAAGVAVPV LTN